Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002561`

染色体: Chr03 坐标: 40796106-40802176 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002561`
名称	SmilChr03G002561
描述	phosphatidate phosphatase PAH1-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	40796106 - 40802176 / `+`

ID 对照

NCBI Gene ID	`LOC131016720`
GeneID	`131016720`
locus_tag	`-`
NCBI Name	`LOC131016720`
原始查询	`SmilChr03G002561`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphatidate phosphatase PAH1-like
产物	phosphatidate phosphatase PAH1-like
Arabidopsis	`AT3G09560` (PAH1) Lipin family protein [Source:NCBI gene (formerly Entrezgene);Acc:820113] identity=70.3; qcov=0.462; evalue=0; confidence=medium
Rice	`Os11g0615000` - identity=85; qcov=0.239; evalue=7.18e-131; confidence=weak
GO	GO:0008195 (phosphatidate phosphatase activity); GO:0044255 (GO:0044255)
KEGG	smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF04571 (Lipin_N); PF08235 (LNS2); PF16876 (Lipin_mid)
InterPro	-
eggNOG	-
NR	GeneID:131016720

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.60000	`XP_057801403.1`
2	Golgi apparatus	高尔基体	0.60000	`XP_057801403.1`
3	Trans-golgi network	Trans-golgi network	0.20000	`XP_057801403.1`
4	Peroxisome	过氧化物酶体	0.20000	`XP_057801403.1`
5	Nucleus	细胞核	0.00000	`XP_057801403.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:40797234`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr3:40797485`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr3:40797612`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr3:40797732`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr3:40797948`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:40798063`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr3:40798594`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr3:40798770`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801403.1

897 aa

448

897

Lipin_N

Lipin_mid

LNS2

PF04571 Lipin_N 1-97 aa PF16876 Lipin_mid 486-576 aa PF08235 LNS2 649-871 aa

XP_057801404.1

897 aa

448

897

Lipin_N

Lipin_mid

LNS2

PF04571 Lipin_N 1-97 aa PF16876 Lipin_mid 486-576 aa PF08235 LNS2 649-871 aa

XP_057801405.1

897 aa

448

897

Lipin_N

Lipin_mid

LNS2

PF04571 Lipin_N 1-97 aa PF16876 Lipin_mid 486-576 aa PF08235 LNS2 649-871 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801403.1`	Pfam	`PF04571`	Lipin_N	Family	1	97	3.7e-32	111.1	lipin, N-terminal conserved region
`XP_057801403.1`	Pfam	`PF16876`	Lipin_mid	Family	486	576	3.3e-18	66.3	Lipin/Ned1/Smp2 multi-domain protein middle domain
`XP_057801403.1`	Pfam	`PF08235`	LNS2	Domain	649	871	3e-97	325.2	LNS2 (Lipin/Ned1/Smp2)
`XP_057801404.1`	Pfam	`PF04571`	Lipin_N	Family	1	97	3.7e-32	111.1	lipin, N-terminal conserved region
`XP_057801404.1`	Pfam	`PF16876`	Lipin_mid	Family	486	576	3.3e-18	66.3	Lipin/Ned1/Smp2 multi-domain protein middle domain
`XP_057801404.1`	Pfam	`PF08235`	LNS2	Domain	649	871	3e-97	325.2	LNS2 (Lipin/Ned1/Smp2)
`XP_057801405.1`	Pfam	`PF04571`	Lipin_N	Family	1	97	3.7e-32	111.1	lipin, N-terminal conserved region
`XP_057801405.1`	Pfam	`PF16876`	Lipin_mid	Family	486	576	3.3e-18	66.3	Lipin/Ned1/Smp2 multi-domain protein middle domain
`XP_057801405.1`	Pfam	`PF08235`	LNS2	Domain	649	871	3e-97	325.2	LNS2 (Lipin/Ned1/Smp2)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057945422.1
AACTTGTTTGATTCAAGCACTGCACTGCCTATCTATCTGACTCCACCTTTGGTTGCTATCCAGAATTTCCTCGTTGCATTAATTTATGTTCAAAATGCAAATATACTTATTTTCCAATAAAATAATAATATAAATTCTCATTTATTGACATTCGTAGTAGGAAGAAAATTCAAGAAAGAAATACTTCAAGTTTTGCACACAATCACCTACCATTCGGAGAGAGAAAAATGGACGACCCTTAAAAATATATTCTTGGAATC...

XM_057945420.1
AATTCAAGAAAGAAATACTTCAAGTTTTGCACACAATCACCTACCATTCGGAGAGAGAAAAATGGACGACCCTTAAAAATATATTCTTGGAATCTTCTCTCTGCAAAACAATTCACCGATTTTACTTCATCTTCTGGCCTACCAAATACACATCACTTCAATCTTCAATCTTCAATCTTCAATCTTTCGAGCTTCGATTCGTTTCTGGGAAATTCGCAAATTCTTGAATTTGTGTAAATGTCGGAAATTCCGAGGATTGA...

CDS

3 records

下载 CDS FASTA

LOC131016720
ATGAATGTGGTGGGTAGAGTTAGCAGCTTCATAACACAAGGAGTGTACTCTGTGGCCACACCGTTTCATCCGTTTGGTGGGGCGGTTGATATAATCGTTGTTAAGCAAAATGATGGGACGTTTAGGAGTACGCCTTGGTATGTTCGATTTGGCAAATTTCAAGGCGTTCTCAAAGGGGCAGAGAAGGTTGTCCGTATAGAAGTCAATGGTGTTGAAGCCAATTTTCATATGCATCTTGATAACTCCGGCGAAGCTTATTT...

Protein

3 records

下载 Protein FASTA

XP_057801403.1
MNVVGRVSSFITQGVYSVATPFHPFGGAVDIIVVKQNDGTFRSTPWYVRFGKFQGVLKGAEKVVRIEVNGVEANFHMHLDNSGEAYFVREVDADKDDREGIKDSDSLEGGREDNSSVYSNAESSPKENDFFGQEIDDFNSGEVEMRDLRTTLGMKRLERVESDSERIFYEFQDEQSSLDGSVEFSEYGSGRYDNLDSVEHSLEESENSSSEVVLVSVDGHILMAPISSIVTDAASVQLSTPQFHLGPGERTQEFNGDDDS...

XP_057801404.1
MNVVGRVSSFITQGVYSVATPFHPFGGAVDIIVVKQNDGTFRSTPWYVRFGKFQGVLKGAEKVVRIEVNGVEANFHMHLDNSGEAYFVREVDADKDDREGIKDSDSLEGGREDNSSVYSNAESSPKENDFFGQEIDDFNSGEVEMRDLRTTLGMKRLERVESDSERIFYEFQDEQSSLDGSVEFSEYGSGRYDNLDSVEHSLEESENSSSEVVLVSVDGHILMAPISSIVTDAASVQLSTPQFHLGPGERTQEFNGDDDS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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