当前解析结果
SmilChr03G002571| 统一新 Gene ID | SmilChr03G002571 |
|---|---|
| 名称 | SmilChr03G002571 |
| 描述 | exocyst complex component EXO70H1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 40896814 - 40898886 / - |
| NCBI Gene ID | LOC131016729 |
|---|---|
| GeneID | 131016729 |
| locus_tag | - |
| NCBI Name | LOC131016729 |
| 原始查询 | SmilChr03G002571 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | exocyst complex component EXO70H1-like |
| 产物 | exocyst complex component EXO70H1-like |
| Arabidopsis | AT3G09520 (EXO70H4)exocyst subunit exo70 family protein H4 [Source:NCBI gene (formerly Entrezgene);Acc:820109] identity=53.5; qcov=0.976; evalue=0; confidence=high |
| Rice | Os04g0382200 (EXO70F3)- identity=31.5; qcov=0.955; evalue=3.3e-86; confidence=low |
| GO | GO:0000145 (exocyst); GO:0005546 (phosphatidylinositol-4,5-bisphosphate binding); GO:0006887 (exocytosis) |
| KEGG | - |
| Pfam | PF03081 (Exo70_C); PF20669 (Exo70_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016729 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057801418.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057801418.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057801418.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057801418.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057801418.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:40897093 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B20,B93,C19,C78,C83 |
Chr3:40897131 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B106,B133,B138,B82 |
Chr3:40897165 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr3:40897166 |
TCG |
T |
2bp_deletion | frameshift_variant | 1 | B75 |
Chr3:40897166 |
TCG |
T |
2bp_deletion | CDS_variant | 1 | B75 |
Chr3:40897176 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr3:40897425 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A9,B57,B76,C36,C49 |
Chr3:40897572 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,B104 |
Chr3:40897578 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr3:40897635 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr3:40897653 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,B104 |
Chr3:40897848 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057801418.1PF20669
Exo70_N 46-128 aa
PF03081
Exo70_C 242-601 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801418.1 |
Pfam | PF20669 |
Exo70_N | Repeat | 46 | 128 | 2.4e-20 | 73.2 | Exocyst complex component Exo70 N-terminal |
XP_057801418.1 |
Pfam | PF03081 |
Exo70_C | Repeat | 242 | 601 | 1.8e-111 | 373.5 | Exo70 exocyst complex subunit C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。