Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002587`

染色体: Chr03 坐标: 41165434-41170176 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002587`
名称	SmilChr03G002587
描述	type I inositol polyphosphate 5-phosphatase 8-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	41165434 - 41170176 / `+`

ID 对照

NCBI Gene ID	`LOC131016745`
GeneID	`131016745`
locus_tag	`-`
NCBI Name	`LOC131016745`
原始查询	`SmilChr03G002587`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	type I inositol polyphosphate 5-phosphatase 8-like
产物	type I inositol polyphosphate 5-phosphatase 8-like
Arabidopsis	`AT2G37440` (AT2G37440) DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818321] identity=59.5; qcov=0.991; evalue=1.46e-177; confidence=high
Rice	`Os05g0114100` - identity=55.2; qcov=0.904; evalue=1.62e-133; confidence=high
GO	GO:0004439 (phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity); GO:0004445 (inositol-polyphosphate 5-phosphatase activity); GO:0034485 (phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity); GO:0046856 (phosphatidylinositol dephosphorylation)
KEGG	-
Pfam	PF22669 (Exo_endo_phos2)
InterPro	-
eggNOG	-
NR	GeneID:131016745

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057801442.1`
2	Cytoplasm	细胞质	0.80000	`XP_057801444.1`
3	Chloroplast	叶绿体	0.20000	`XP_057801444.1`
4	Nucleus	细胞核	0.00000	`XP_057801442.1`
5	Chromosome	染色体	0.00000	`XP_057801442.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:41167451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B19,C75
`Chr3:41168205`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr3:41168285`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B56,C31,C66,C81
`Chr3:41168321`	`TAA`	`T`	2bp_deletion	frameshift_variant	8	B118,B28,B29,B30,B35,C14,C20,C63
`Chr3:41168462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B11,B49
`Chr3:41168998`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr3:41169714`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801442.1

466 aa

233

466

Exo_endo_phos2

PF22669 Exo_endo_phos2 96-454 aa

XP_057801443.1

466 aa

233

466

Exo_endo_phos2

PF22669 Exo_endo_phos2 96-454 aa

XP_057801444.1

439 aa

220

439

Exo_endo_phos2

PF22669 Exo_endo_phos2 96-427 aa

XP_057801445.1

439 aa

220

439

Exo_endo_phos2

PF22669 Exo_endo_phos2 96-427 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801442.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	96	454	5.6e-68	230.3	Endonuclease/Exonuclease/phosphatase family 2
`XP_057801443.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	96	454	5.6e-68	230.3	Endonuclease/Exonuclease/phosphatase family 2
`XP_057801444.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	96	427	1.2e-73	248.9	Endonuclease/Exonuclease/phosphatase family 2
`XP_057801445.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	96	427	1.2e-73	248.9	Endonuclease/Exonuclease/phosphatase family 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057945461.1
CTCTCTCTCTCTCTCTACACGCAGAGACGGACACTTGGATGTTTGTGAAGTCTTCCTTGTATCTCTCCCTCTCTCTCTCTTCTCGACACAGAGACAACCAATTGTGAACTCTGTATAAATCTAGAACCAAACTGCCGCTTTTTTTTGTTTCTCCGAGGAGCGCCCTCTCTCTCTCTCTCAACTTCTCTCTTTTCTATCCCTATTTTCTCTGCAACAGAAACGCTTTTGGAAAGGAAATACGGCAGCTTAAACACCAATTC...

XM_057945459.1
CTCTCTCTCTCTACACGCAGAGACGGACACTTGGATGTTTGTGAAGTCTTCCTTGTATCTCTCCCTCTCTCTCTCTTCTCGACACAGAGACAACCAATTGTGAACTCTGTATAAATCTAGAACCAAACTGCCGCTTTTTTTTGTTTCTCCGAGGAGCGCCCTCTCTCTCTCTCTCAACTTCTCTCTTTTCTATCCCTATTTTCTCTGCAACAGAAACGCTTTTGGAAAGGAAATACGGCAGCTTAAACACCAATTCTTCT...

CDS

4 records

下载 CDS FASTA

LOC131016745
ATGAGACAAGAAGGAAAATTTCTCAAGTCCAACTCGTGGCCGAAAACGGTGGCCAGAAAATGGTTGAATTTAAAGGGTGGATCGGATGAATTTGACTCAGATTATGACACAAAAGCTTTTCTTCAGAGGAGTTTGAAGTGTTGCTCCGACGATGGGCCTTCCACCGTCGTGCCGGAGGAATTATCAGAGGAGTGGTTGATGGAAACGAGCGACGAAATTGAGCGCCCAGGATTTGACCAGCTTGTGCCACCTGTCTCTAC...

Protein

4 records

下载 Protein FASTA

XP_057801442.1
MRQEGKFLKSNSWPKTVARKWLNLKGGSDEFDSDYDTKAFLQRSLKCCSDDGPSTVVPEELSEEWLMETSDEIERPGFDQLVPPVSTDLDLRMFVGTWNVGGKTPEDDLNIDDWLKTKTPADIYVLGYVFIHINIIYVSSIKPILILICYIWFRFQEIVPLNAGNVLGQEDYSPAAKWLSLIRHSLNGDSVNPASKRSLTVTDHDNYFDDILSLSSSSSSSEDDSPSPTKHQKYCLAASKQMVGLFLCVWVREDLNHQIS...

XP_057801443.1
MRQEGKFLKSNSWPKTVARKWLNLKGGSDEFDSDYDTKAFLQRSLKCCSDDGPSTVVPEELSEEWLMETSDEIERPGFDQLVPPVSTDLDLRMFVGTWNVGGKTPEDDLNIDDWLKTKTPADIYVLGYVFIHINIIYVSSIKPILILICYIWFRFQEIVPLNAGNVLGQEDYSPAAKWLSLIRHSLNGDSVNPASKRSLTVTDHDNYFDDILSLSSSSSSSEDDSPSPTKHQKYCLAASKQMVGLFLCVWVREDLNHQIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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