当前解析结果
SmilChr03G002588| 统一新 Gene ID | SmilChr03G002588 |
|---|---|
| 名称 | SmilChr03G002588 |
| 描述 | uncharacterized SmilChr03G002588 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 41188626 - 41191816 / + |
| NCBI Gene ID | LOC131016746 |
|---|---|
| GeneID | 131016746 |
| locus_tag | - |
| NCBI Name | LOC131016746 |
| 原始查询 | SmilChr03G002588 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=weak |
| 产物 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=weak |
| Arabidopsis | AT3G05850 (MUG7)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859] identity=24.1; qcov=0.955; evalue=6.71e-60; confidence=weak |
| Rice | Os12g0597300- identity=26.7; qcov=0.664; evalue=1.07e-54; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016746 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057801446.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057801446.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057801447.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057801447.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057801447.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:41189035 |
TG |
* |
1bp_deletion | CDS_variant | 2 | B124,B136 |
Chr3:41189060 |
G |
A |
EMS_canonical_SNV | stop_gained | 13 | B12,B121,B2,B31,B40,B61,B65,B99,C34,C38,C51,C56,C82 |
Chr3:41189075 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A20,C28 |
Chr3:41189077 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,A3,B54 |
Chr3:41189093 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B13,B60,C4,C64 |
Chr3:41189098 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | A11,A3,B109 |
Chr3:41189098 |
AT |
A |
1bp_deletion | CDS_variant | 3 | A11,A3,B109 |
Chr3:41189124 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B105,B62,B77,C13,C48 |
Chr3:41189148 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr3:41189184 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C26,C76 |
Chr3:41189229 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:41189286 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B120,B122,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801446.1PF00872
Transposase_mut 463-562 aa
PF10551
MULE 464-558 aa
PF04434
SWIM 707-737 aa
XP_057801447.1PF00872
Transposase_mut 427-526 aa
PF10551
MULE 428-522 aa
PF04434
SWIM 671-701 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801446.1 |
Pfam | PF00872 |
Transposase_mut | Family | 463 | 562 | 1.1e-10 | 41.8 | Transposase, Mutator family |
XP_057801446.1 |
Pfam | PF10551 |
MULE | Domain | 464 | 558 | 5.6e-21 | 75.4 | MULE transposase domain |
XP_057801446.1 |
Pfam | PF04434 |
SWIM | Domain | 707 | 737 | 4.3e-07 | 30.0 | SWIM zinc finger |
XP_057801447.1 |
Pfam | PF00872 |
Transposase_mut | Family | 427 | 526 | 9.8e-11 | 41.9 | Transposase, Mutator family |
XP_057801447.1 |
Pfam | PF10551 |
MULE | Domain | 428 | 522 | 9.8e-21 | 74.7 | MULE transposase domain |
XP_057801447.1 |
Pfam | PF04434 |
SWIM | Domain | 671 | 701 | 4.1e-07 | 30.1 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。