Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002592`

染色体: Chr03 坐标: 41229348-41233430 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002592`
名称	SmilChr03G002592
描述	soluble inorganic pyrophosphatase 4-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	41229348 - 41233430 / `+`

ID 对照

NCBI Gene ID	`LOC131016750`
GeneID	`131016750`
locus_tag	`-`
NCBI Name	`LOC131016750`
原始查询	`SmilChr03G002592`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	soluble inorganic pyrophosphatase 4-like
产物	soluble inorganic pyrophosphatase 4-like
Arabidopsis	`AT3G53620` (PPa4) pyrophosphorylase 4 [Source:NCBI gene (formerly Entrezgene);Acc:824530] identity=83.8; qcov=1.01; evalue=2.57e-132; confidence=high
Rice	`Os05g0114000` - identity=83.5; qcov=1.02; evalue=8.6e-132; confidence=high
GO	GO:0000287 (magnesium ion binding); GO:0004427 (inorganic diphosphate phosphatase activity); GO:0005737 (cytoplasm); GO:0006796 (phosphate-containing compound metabolic process)
KEGG	smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage))
Pfam	PF00719 (Pyrophosphatase)
InterPro	-
eggNOG	-
NR	GeneID:131016750

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057801452.1`
2	Cytoplasm	细胞质	0.80000	`XP_057801452.1`
3	Nucleus	细胞核	0.00000	`XP_057801452.1`
4	Chromosome	染色体	0.00000	`XP_057801452.1`
5	Centromere	着丝粒	0.00000	`XP_057801452.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:41230845`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr3:41231760`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B24,C12,C76
`Chr3:41231762`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr3:41231804`	`GA`	`G`	1bp_deletion	frameshift_variant	3	A4,B71,C62
`Chr3:41231804`	`GA`	`G`	1bp_deletion	CDS_variant	3	A4,B71,C62
`Chr3:41231814`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A3,B117,B20,B97
`Chr3:41232430`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A4,B43
`Chr3:41232634`	`TTA`	`T`	2bp_deletion	frameshift_variant	33	A11,A13,A14,A15,A21,A24,A5,B101,B103,B106,B109,B17,B31,B33,B35,B36,B44,B67,B69,B77,B93,B95,B97,C16,C19,C26,C28,C30,C42,C44,C48,C50,C61
`Chr3:41232639`	`G`	`GCC`	2bp_insertion	frameshift_variant	34	A11,A13,A14,A15,A21,A24,A5,B101,B103,B106,B109,B17,B31,B33,B35,B36,B44,B67,B69,B70,B77,B93,B95,B97,C16,C19,C26,C28,C30,C42,C44,C48,C50,C61
`Chr3:41232861`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B67,C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801452.1

213 aa

106

213

Pyrophosphatase

PF00719 Pyrophosphatase 52-203 aa

XP_057801453.1

213 aa

106

213

Pyrophosphatase

PF00719 Pyrophosphatase 52-203 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801452.1`	Pfam	`PF00719`	Pyrophosphatase	Domain	52	203	7.8e-58	195.4	Inorganic pyrophosphatase
`XP_057801453.1`	Pfam	`PF00719`	Pyrophosphatase	Domain	52	203	7.8e-58	195.4	Inorganic pyrophosphatase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945470.1
TATCGTATTTATGCTCGTCTTTGAATGGCGAACAAGGCTAGCACGAAACAGAGCGGGAACGCGTGACGTACCCCAGCAGTAGCTCAGAGTGGAAGATTTCCTTTACTTAGCTCTTCTTTCTCTCTTTCTAGGGCGCCTTTCTCCTTCCTGTGCTCTGTTTCGCCTCTGTTCGCCGTTTCAGTTATGGCACCACCTACAGAGCAGTCAGAAAAAATCCCTGTTTTCCAGAAGCTGCCTCTTAATGAAAGGATACTCTCTTC...

XM_057945469.1
ATTTATGCTCGTCTTTGAATGGCGAACAAGGCTAGCACGAAACAGAGCGGGAACGCGTGACGTACCCCAGCAGTAGCTCAGAGTGGAAGATTTCCTTTACTTAGCTCTTCTTTCTCTCTTTCTAGGGTTTTTATCTCTCTAAAACTCTTACCTCCTGCATAAATAACTAACGCTTGCCTTCATTTTCACGCCGAGTATCGTTCGCACGGAGATCTGAGCCGTTTCGTTCCATTACAGGCGCCTTTCTCCTTCCTGTGCTC...

CDS

2 records

下载 CDS FASTA

LOC131016750
ATGGCACCACCTACAGAGCAGTCAGAAAAAATCCCTGTTTTCCAGAAGCTGCCTCTTAATGAAAGGATACTCTCTTCCATGACTAGGAAAACTGTCGCTGCTCATCCTTGGCATGATCTTGAGATAGGACCTGGAGCTCCAACGATCTTCAACTGTGTGGTCGAAATAAGTAAGGGAAGTAAGGTGAAATATGAACTTGACAAGAAAACTGGTCTAATCAAGGTTGATCGAGTTCTTTACTCATCTGTTGTGTACCCTCA...

Protein

2 records

下载 Protein FASTA

XP_057801452.1
MAPPTEQSEKIPVFQKLPLNERILSSMTRKTVAAHPWHDLEIGPGAPTIFNCVVEISKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDSDPMDVLVIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRDYTDIKELPPHRLAEIRRFFEDYKKNENKDVAVDEFLPATNAYEAIQLSMDLYADYIVESLRR

XP_057801453.1
MAPPTEQSEKIPVFQKLPLNERILSSMTRKTVAAHPWHDLEIGPGAPTIFNCVVEISKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDSDPMDVLVIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRDYTDIKELPPHRLAEIRRFFEDYKKNENKDVAVDEFLPATNAYEAIQLSMDLYADYIVESLRR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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