Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002597`

染色体: Chr03 坐标: 41262782-41272206 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002597`
名称	SmilChr03G002597
描述	uncharacterized SmilChr03G002597
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	41262782 - 41272206 / `-`

ID 对照

NCBI Gene ID	`LOC131016754`
GeneID	`131016754`
locus_tag	`-`
NCBI Name	`LOC131016754`
原始查询	`SmilChr03G002597`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818328]; symbol=AT2G37520; hit=AT2G37520; species=arabidopsis; confidence=high
产物	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818328]; symbol=AT2G37520; hit=AT2G37520; species=arabidopsis; confidence=high
Arabidopsis	`AT2G37520` (AT2G37520) Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818328] identity=53.3; qcov=0.815; evalue=0; confidence=high
Rice	`Os06g0101000` (B1460A05.22) - identity=39.6; qcov=0.649; evalue=2.79e-149; confidence=medium
GO	-
KEGG	-
Pfam	PF00628 (PHD); PF16135 (TDBD); PF23011 (PHD-1st_NSD); PF23209 (IDM1_C)
InterPro	-
eggNOG	-
NR	GeneID:131016754

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057801456.1`
2	Chromosome	染色体	0.00000	`XP_057801456.1`
3	Centromere	着丝粒	0.00000	`XP_057801456.1`
4	Chromatin	染色质	0.00000	`XP_057801456.1`
5	Telomere	端粒	0.00000	`XP_057801456.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:41264572`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B56
`Chr3:41265728`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B125,C73
`Chr3:41265938`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:41266913`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B132,C77
`Chr3:41266918`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr3:41267979`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,C72
`Chr3:41269029`	`AGT`	`A`	2bp_deletion	frameshift_variant	61	A21,A25,A3,A7,A8,B102,B106,B110,B113,B118,B124,B127,B13,B135,B15,B16,B17,B2,B20,B25,B36,B43,B55,B56,B57,B7,B70,B72,B76,B87,B88,B9,B90,B92,B94,B96,C11,C23,C25,C3,C31,C33,C46,C48,C49,C51,C52,C57,C65,C66,C69,C7,C72,C76,C82,C84,C87,D2,D3,D4,D6
`Chr3:41269033`	`C`	`CTT`	2bp_insertion	frameshift_variant	59	A21,A25,A3,A7,A8,B102,B105,B106,B110,B113,B118,B124,B127,B135,B15,B16,B2,B20,B25,B36,B39,B43,B55,B56,B57,B7,B72,B76,B87,B88,B9,B90,B92,B96,C11,C17,C23,C25,C3,C31,C33,C46,C48,C51,C52,C57,C65,C66,C69,C7,C72,C76,C82,C84,C87,D2,D3,D4,D6
`Chr3:41269054`	`TAC`	`T`	2bp_deletion	frameshift_variant	2	B51,C30
`Chr3:41269054`	`TAC`	`T`	2bp_deletion	CDS_variant	2	B51,C30
`Chr3:41269055`	`A`	`AC`	1bp_insertion	frameshift_variant	102	A19,A21,A23,A25,A3,A5,A7,A8,B10,B102,B105,B106,B107,B109,B110,B111,B113,B114,B117,B118,B119,B123,B124,B129,B13,B130,B134,B135,B138,B15,B16,B17,B2,B20,B21,B24,B25,B33,B34,B36,B42,B43,B47,B55,B56,B57,B62,B65,B7,B72,B76,B80,B83,B85,B87,B88,B89,B90,B91,B92,B93,B94,B96,C11,C16,C17,C21,C22,C23,C25,C26,C3,C31,C33,C34,C38,C39,C41,C45,C46,C48,C49,C51,C52,C54,C55,C56,C57,C65,C66,C69,C7,C72,C73,C76,C82,C84,C87,D2,D3,D4,D6
`Chr3:41269056`	`CA`	`C`	1bp_deletion	frameshift_variant	85	A1,A14,A18,A21,A22,A6,B100,B101,B103,B108,B109,B115,B119,B120,B124,B126,B128,B130,B136,B139,B16,B18,B19,B22,B23,B3,B32,B33,B36,B45,B46,B48,B53,B56,B58,B59,B6,B63,B64,B68,B69,B76,B77,B8,B81,B84,B85,B9,B94,B95,B98,C10,C16,C18,C19,C22,C26,C29,C30,C32,C34,C37,C38,C39,C40,C41,C43,C44,C45,C46,C60,C61,C63,C68,C73,C75,C79,C9,D1,D10,D11,D2,D4,D8,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801456.1

1070 aa

535

1070

TDBD

PHD-1st_NSD

PHD

IDM1_C

PF16135 TDBD 453-507 aa PF16135 TDBD 665-710 aa PF23011 PHD-1st_NSD 726-769 aa PF00628 PHD 729-768 aa PF23209 IDM1_C 930-1067 aa

XP_057801457.1

1069 aa

534

1069

TDBD

PHD-1st_NSD

PHD

IDM1_C

PF16135 TDBD 452-506 aa PF16135 TDBD 664-709 aa PF23011 PHD-1st_NSD 725-768 aa PF00628 PHD 728-767 aa PF23209 IDM1_C 929-1066 aa

XP_057801458.1

1068 aa

534

1068

TDBD

PHD-1st_NSD

PHD

IDM1_C

PF16135 TDBD 453-507 aa PF16135 TDBD 663-708 aa PF23011 PHD-1st_NSD 724-767 aa PF00628 PHD 727-766 aa PF23209 IDM1_C 928-1065 aa

XP_057801459.1

1049 aa

524

1049

TDBD

PHD-1st_NSD

PHD

IDM1_C

PF16135 TDBD 432-486 aa PF16135 TDBD 644-689 aa PF23011 PHD-1st_NSD 705-748 aa PF00628 PHD 708-747 aa PF23209 IDM1_C 909-1046 aa

XP_057801460.1

1047 aa

524

1047

TDBD

PHD-1st_NSD

PHD

IDM1_C

PF16135 TDBD 432-486 aa PF16135 TDBD 642-687 aa PF23011 PHD-1st_NSD 703-746 aa PF00628 PHD 706-745 aa PF23209 IDM1_C 907-1044 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801456.1`	Pfam	`PF16135`	TDBD	Domain	453	507	3.1e-27	95.0	Tify domain binding domain
`XP_057801456.1`	Pfam	`PF16135`	TDBD	Domain	665	710	3.1e-27	95.0	Tify domain binding domain
`XP_057801456.1`	Pfam	`PF23011`	PHD-1st_NSD	Domain	726	769	4.3e-07	30.7	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
`XP_057801456.1`	Pfam	`PF00628`	PHD	Domain	729	768	3.1e-08	34.2	PHD-finger
`XP_057801456.1`	Pfam	`PF23209`	IDM1_C	Domain	930	1067	4.7e-49	166.8	Increased DNA methylation 1, C-terminal domain
`XP_057801457.1`	Pfam	`PF16135`	TDBD	Domain	452	506	3.1e-27	95.0	Tify domain binding domain
`XP_057801457.1`	Pfam	`PF16135`	TDBD	Domain	664	709	3.1e-27	95.0	Tify domain binding domain
`XP_057801457.1`	Pfam	`PF23011`	PHD-1st_NSD	Domain	725	768	4.3e-07	30.7	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
`XP_057801457.1`	Pfam	`PF00628`	PHD	Domain	728	767	3.1e-08	34.2	PHD-finger
`XP_057801457.1`	Pfam	`PF23209`	IDM1_C	Domain	929	1066	4.7e-49	166.8	Increased DNA methylation 1, C-terminal domain
`XP_057801458.1`	Pfam	`PF16135`	TDBD	Domain	453	507	3e-27	95.1	Tify domain binding domain
`XP_057801458.1`	Pfam	`PF16135`	TDBD	Domain	663	708	3e-27	95.1	Tify domain binding domain
`XP_057801458.1`	Pfam	`PF23011`	PHD-1st_NSD	Domain	724	767	4.3e-07	30.7	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
`XP_057801458.1`	Pfam	`PF00628`	PHD	Domain	727	766	3e-08	34.3	PHD-finger
`XP_057801458.1`	Pfam	`PF23209`	IDM1_C	Domain	928	1065	4.7e-49	166.8	Increased DNA methylation 1, C-terminal domain
`XP_057801459.1`	Pfam	`PF16135`	TDBD	Domain	432	486	2.9e-27	95.1	Tify domain binding domain
`XP_057801459.1`	Pfam	`PF16135`	TDBD	Domain	644	689	2.9e-27	95.1	Tify domain binding domain
`XP_057801459.1`	Pfam	`PF23011`	PHD-1st_NSD	Domain	705	748	4e-07	30.8	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
`XP_057801459.1`	Pfam	`PF00628`	PHD	Domain	708	747	2.9e-08	34.3	PHD-finger
`XP_057801459.1`	Pfam	`PF23209`	IDM1_C	Domain	909	1046	4.6e-49	166.8	Increased DNA methylation 1, C-terminal domain
`XP_057801460.1`	Pfam	`PF16135`	TDBD	Domain	432	486	2.8e-27	95.2	Tify domain binding domain
`XP_057801460.1`	Pfam	`PF16135`	TDBD	Domain	642	687	2.8e-27	95.2	Tify domain binding domain
`XP_057801460.1`	Pfam	`PF23011`	PHD-1st_NSD	Domain	703	746	4e-07	30.8	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
`XP_057801460.1`	Pfam	`PF00628`	PHD	Domain	706	745	2.8e-08	34.4	PHD-finger
`XP_057801460.1`	Pfam	`PF23209`	IDM1_C	Domain	907	1044	4.6e-49	166.8	Increased DNA methylation 1, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057945474.1
TACTCCAACTTCAACTGCTGCTACTATAACCTGTAATCCATACCGCCAATCCAACTTTTCAGTTTTCTCTCAAATAACAGAAAATTTCACAACCAATACCCAAAACCCTAATAATTTCCCTCCTTCATTGTTGTTTCCTTCCATTGTTAGATCTGTGATTTCTGAACTATTATACTCGTAGTCGCGCTCACGAATTGGAGTTTTGGATTGAACAATTGACGCAGTTACCAGATCTGTCGGAGTTTCATTTTCGGATGAGT...

XM_057945473.1
TACTCCAACTTCAACTGCTGCTACTATAACCTGTAATCCATACCGCCAATCCAACTTTTCAGTTTTCTCTCAAATAACAGAAAATTTCACAACCAATACCCAAAACCCTAATAATTTCCCTCCTTCATTGTTGTTTCCTTCCATTGTTAGATCTGTGATTTCTGAACTATTATACTCGTAGTCGCGCTCACGAATTGGAGTTTTGGATTGAACAATTGACGCAGTTACCAGATCTGTCGGAGTTTCATTTTCGGATGAGT...

CDS

5 records

下载 CDS FASTA

LOC131016754
ATGGGTTTTTGTGGATGGGGGAGGTGGGAGTGGAACTTGGGTGGTTGTTATTTCGTTAATGCGATGGAAATGAACGGTGGATTGAGGATTAATTCAGAGAGCGGGCAACATTCGATAGGGTATGGTGCGGGAGGCGAGTGGATGGTGCAGGAAGAAACGAGGAAATCATTCAATGATATTGAGATGACGCCTTGTGTGGCAACTGAGTTTATGGATGGTGAAAGTGAGTCTGTCTTTTATGACGTGAAGGTAACTGAAGA...

Protein

5 records

下载 Protein FASTA

XP_057801456.1
MGFCGWGRWEWNLGGCYFVNAMEMNGGLRINSESGQHSIGYGAGGEWMVQEETRKSFNDIEMTPCVATEFMDGESESVFYDVKVTEEVFDETELMCSVDVLSSNSELVYESHVKNGAKSKSCSEIQLRGPVDYSASEPCTRARANDVFSSAELKPSVEDHETEIFMNDMAKEAQNGGDTEPKGVLNDSEMDLRAENHALEQLDDGKVELYSNSDEVKEAQNYSGLETCHKNQVKEPTNDDLHSEVSNPNLSPKQVTSSFT...

XP_057801457.1
MGFCGWGRWEWNLGGCYFVNAMEMNGGLRINSESGQHSIGYGAGGEWMVQEETRKSFNDIEMTPCVATEFMDGESESVFYDVKVTEEVFDETELMCSVDVLSSNSELVYESHVKNGAKSKSCSEIQLRGPVDYSASEPCTRARANDVFSSAELKPSVEDHETEIFMNDMAKEAQNGGDTEPKGVLNDSEMDLRAENHALEQLDDGKVELYSNSDEVKEAQNYSGLETCHKNQVKEPTNDDLHSEVSNPNLSPKQVTSSFT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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