Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002618`

染色体: Chr03 坐标: 41573527-41579331 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002618`
名称	SmilChr03G002618
描述	importin subunit alpha-9
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	41573527 - 41579331 / `-`

ID 对照

NCBI Gene ID	`LOC131016773`
GeneID	`131016773`
locus_tag	`-`
NCBI Name	`LOC131016773`
原始查询	`SmilChr03G002618`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	importin subunit alpha-9
产物	importin subunit alpha-9
Arabidopsis	`AT5G03070` (IMPA-9) importin alpha isoform 9 [Source:NCBI gene (formerly Entrezgene);Acc:831675] identity=74.2; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0158000` - identity=65; qcov=1.01; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006607 (NLS-bearing protein import into nucleus); GO:0008139 (nuclear localization sequence binding); GO:0061608 (nuclear import signal receptor activity)
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF00514 (Arm)
InterPro	-
eggNOG	-
NR	GeneID:131016773

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057801482.1`
2	Cytoplasm	细胞质	0.80000	`XP_057801482.1`
3	Nucleus	细胞核	0.60000	`XP_057801483.1`
4	Golgi apparatus	高尔基体	0.20000	`XP_057801483.1`
5	Chromosome	染色体	0.00000	`XP_057801482.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:41573878`	`CT`	`C`	1bp_deletion	frameshift_variant	131	A1,A11,A14,A15,A18,A19,A2,A20,A21,A3,A5,A9,B1,B100,B105,B106,B108,B109,B112,B113,B114,B115,B117,B118,B12,B122,B123,B124,B126,B127,B129,B13,B130,B131,B132,B133,B137,B138,B14,B140,B19,B2,B20,B21,B24,B25,B27,B3,B31,B32,B33,B35,B37,B38,B39,B44,B47,B49,B50,B52,B53,B54,B55,B56,B60,B62,B63,B66,B69,B7,B71,B73,B74,B76,B79,B82,B83,B86,B88,B9,B90,B91,B92,B94,B95,B96,B97,C1,C12,C19,C20,C23,C27,C3,C33,C34,C36,C38,C41,C44,C47,C49,C50,C52,C56,C59,C6,C61,C62,C64,C65,C66,C71,C72,C73,C76,C77,C78,C79,C8,C80,C81,C83,C86,C9,D1,D11,D3,D5,D6,D7
`Chr3:41573893`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B22,B48,B64,C24
`Chr3:41573903`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A4,B42,B43
`Chr3:41574022`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr3:41574183`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B78,C44,D6
`Chr3:41577852`	`TAA`	`T`	2bp_deletion	frameshift_variant	1	C62
`Chr3:41577852`	`TAA`	`T`	2bp_deletion	CDS_variant	1	C62
`Chr3:41578171`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr3:41578184`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B23,B49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801482.1

511 aa

256

511

Arm

PF00514 Arm 112-150 aa PF00514 Arm 195-231 aa PF00514 Arm 373-408 aa

XP_057801483.1

470 aa

235

470

Arm

PF00514 Arm 71-109 aa PF00514 Arm 154-190 aa PF00514 Arm 332-367 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801482.1`	Pfam	`PF00514`	Arm	Repeat	112	150	2.6e-34	116.8	Armadillo/beta-catenin-like repeat
`XP_057801482.1`	Pfam	`PF00514`	Arm	Repeat	195	231	2.6e-34	116.8	Armadillo/beta-catenin-like repeat
`XP_057801482.1`	Pfam	`PF00514`	Arm	Repeat	373	408	2.6e-34	116.8	Armadillo/beta-catenin-like repeat
`XP_057801483.1`	Pfam	`PF00514`	Arm	Repeat	71	109	1.1e-34	118.1	Armadillo/beta-catenin-like repeat
`XP_057801483.1`	Pfam	`PF00514`	Arm	Repeat	154	190	1.1e-34	118.1	Armadillo/beta-catenin-like repeat
`XP_057801483.1`	Pfam	`PF00514`	Arm	Repeat	332	367	1.1e-34	118.1	Armadillo/beta-catenin-like repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945499.1
TATGGCTGTATAGATTTATTGATGGAAATATCCCAGGAAACCAAACATTAGAGAGGAACCGTACATTCCCAAATTTCAAGAAACCCCAAATTTTTGTACATAGCCCACCAGTTCTAGAGGGCGCGAATTTCAATAAAAATTTCGATTCCCTCTTCTCCTTCGAACTGCTGGATTTTATTGTCGAAAACTCATTATTTGGTTTGCTCTGTAGCTTAATCAATCAAAACATTCCTGTAAAAGAGCTGGATATTGTGAACAAT...

XM_057945500.1
TTGAGGAACGAAGAGTGAGTGAGAGTGTGATGGCTGAAGAAGATGTTGGGTGCTTCTGTTTCTCTTGGTGGCTATTTTTACTTTTATTTCAATAATGGTGTTTGCAAGAGTCTGAAGCTGATTTCAGTGGGTCGAATTTTGGAAGCGCTGCAGTGCAGAGGAGACGAGATCATGCAGTCACGGTGCGGAAGGAGAGAAGAGAAGCGCTAATGCGGACCAAGCGTTTATGCAGAGACGCTGATGTTCCTGTTGATGGCGAC...

CDS

2 records

下载 CDS FASTA

LOC131016773
ATGGCGGATGAGAACTCTACACCGCATAAAAGAGGACCGATAAAGTCATCAGTTGGAAGCGCTGCAGTGCAGAGGAGACGAGATCATGCAGTCACGGTGCGGAAGGAGAGAAGAGAAGCGCTAATGCGGACCAAGCGTTTATGCAGAGACGCTGATGTTCCTGTTGATGGCGACATGGCAATGGATGAAGAAGAATCGGTTTTGGAGGATCAGACTGTGAAATCCGTTGAAGAACTAAAGCTTGCCATTGCCTATCAGGG...

LOC131016773
ATGCGGACCAAGCGTTTATGCAGAGACGCTGATGTTCCTGTTGATGGCGACATGGCAATGGATGAAGAAGAATCGGTTTTGGAGGATCAGACTGTGAAATCCGTTGAAGAACTAAAGCTTGCCATTGCCTATCAGGGAAAAGGAGCAATGCAAAAGAGGGTCAATGCTCTTCGTGAGCTACGAAGGCTATTGTCAAAATCAGAATATCCTCCAGTTGAAGCTGCCCTGAAGGCTGGAGCTATGCCGACTTTGGCTCAATG...

Protein

2 records

下载 Protein FASTA

XP_057801482.1
MADENSTPHKRGPIKSSVGSAAVQRRRDHAVTVRKERREALMRTKRLCRDADVPVDGDMAMDEEESVLEDQTVKSVEELKLAIAYQGKGAMQKRVNALRELRRLLSKSEYPPVEAALKAGAMPTLAQCLSFGSPDEQLLETAWCLTNIAAGKPEETKALLPALPLLIAHMGEKSSLPVAEQCAWALGNVAGEGEELRDVLLSQGALQPLARMMLPNKGSTVRTAAWALSNLIKGHARAATELIRIDGVLDAILRHLKRGD...

XP_057801483.1
MRTKRLCRDADVPVDGDMAMDEEESVLEDQTVKSVEELKLAIAYQGKGAMQKRVNALRELRRLLSKSEYPPVEAALKAGAMPTLAQCLSFGSPDEQLLETAWCLTNIAAGKPEETKALLPALPLLIAHMGEKSSLPVAEQCAWALGNVAGEGEELRDVLLSQGALQPLARMMLPNKGSTVRTAAWALSNLIKGHARAATELIRIDGVLDAILRHLKRGDEELATEVAWVVVYLTALSNVATSMLAKSDLLQILVDRLASS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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