Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002624`

染色体: Chr03 坐标: 41643900-41646518 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002624`
名称	SmilChr03G002624
描述	rac-like GTP-binding protein 5
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	41643900 - 41646518 / `-`

ID 对照

NCBI Gene ID	`LOC131016777`
GeneID	`131016777`
locus_tag	`-`
NCBI Name	`LOC131016777`
原始查询	`SmilChr03G002624`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	rac-like GTP-binding protein 5
产物	rac-like GTP-binding protein 5
Arabidopsis	`AT2G44690` (ARAC9) RAC-like 9 [Source:NCBI gene (formerly Entrezgene);Acc:819077] identity=83.3; qcov=0.914; evalue=1.03e-118; confidence=high
Rice	`Os02g0312600` (OSRAC7) - identity=82.1; qcov=0.933; evalue=6.11e-118; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005856 (cytoskeleton); GO:0005886 (plasma membrane); GO:0005938 (cell cortex); GO:0007015 (actin filament organization); GO:0007163 (establishment or maintenance of cell polarity); GO:0007264 (small GTPase-mediated signal transduction); GO:0008360 (regulation of cell shape); GO:0019901 (protein kinase binding); GO:0030865 (cortical cytoskeleton organization); GO:0031410 (cytoplasmic vesicle); GO:0032956 (regulation of actin cytoskeleton organization); GO:0042995 (cell projection)
KEGG	smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)); smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage)); smil04517 (IgSF CAM signaling - Salvia miltiorrhiza (redroot sage)); smil04518 (Integrin signaling - Salvia miltiorrhiza (redroot sage)); smil04519 (Cadherin signaling - Salvia miltiorrhiza (redroot sage)); smil04620 (Toll-like receptor signaling pathway - Salvia miltiorrhiza (redroot sage)); smil05100 (Bacterial invasion of epithelial cells - Salvia miltiorrhiza (redroot sage))
Pfam	PF00071 (Ras); PF08477 (Roc)
InterPro	-
eggNOG	-
NR	GeneID:131016777

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057801485.1`
2	Cytoplasm	细胞质	0.20000	`XP_057801485.1`
3	Cytosol	细胞质基质	0.20000	`XP_057801485.1`
4	Cell projection	细胞突起	0.20000	`XP_057801485.1`
5	Nucleus	细胞核	0.00000	`XP_057801485.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:41644181`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A5,B126,B62,C80
`Chr3:41644760`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B69,C23
`Chr3:41645391`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:41646169`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr3:41646235`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B29,B81
`Chr3:41646238`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr3:41646264`	`T`	`TTG`	2bp_insertion	CDS_variant	1	B98

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801485.1

210 aa

105

210

Roc

Ras

PF08477 Roc 22-135 aa PF00071 Ras 22-191 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801485.1`	Pfam	`PF08477`	Roc	Domain	22	135	5.3e-24	85.5	Ras of Complex, Roc, domain of DAPkinase
`XP_057801485.1`	Pfam	`PF00071`	Ras	Domain	22	191	1.8e-53	181.1	Ras family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057945502.1
CTCATTCACTCAGAGTCCCACTGTTTTCTTTTTCCCCCTCCGACAGCTCAAAGTAAAGTGAAAAATTCACTACTTTCATACAAAATCTATAGGTTTGCTTTTTTGGCCCCCCTCCTCATGTCCTCCACTTCCTCCCTCCCTCAAATACTCACCTCATTACTACCCAAACACATCCTGAGAATTAAAAAGGGAATCTTGAATTTCTTCCATACATTCAATCTCTGAGTTCAGCAGGATTTTGCTATGTAGTGATAATGAGT...

CDS

1 records

下载 CDS FASTA

LOC131016777
ATGAGTAGTAATAATACTACTAGTGGCGGCGCTGCTGCAAATTCTACAGCCACCAAATTCATCAAATGTGTCACAGTTGGTGATGGTGCTGTTGGGAAGACCTGCCTTCTCATCTCCTACACTAGCAACACTTTCCCAACTGATTATGTTCCAACTGTGTTTGATAATTTCAGTGCCAATGTGAGTGTTGATGGCCAGACTGTGAATCTGGGCTTGTGGGATACTGCTGGCCAAGAAGACTACAACAGATTGAGGCCTCT...

Protein

1 records

下载 Protein FASTA

XP_057801485.1
MSSNNTTSGGAAANSTATKFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVSVDGQTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRPSFENISKKWVPELRHYAPSVPIVLVGTKLDLREDKQFKKDYPGACTISTEQGEELKKQIGAVAYIECSAKTQQNVKAVFDAAIKVVLRPPKLKKHKRKYASCRLL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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