Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G002625

染色体: Chr03 坐标: 41651615-41653296 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G002625
名称SmilChr03G002625
描述cytochrome c oxidase-assembly factor COX23, mitochondrial
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向41651615 - 41653296 / +

ID 对照

NCBI Gene IDLOC131016779
GeneID131016779
locus_tag-
NCBI NameLOC131016779
原始查询SmilChr03G002625

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述cytochrome c oxidase-assembly factor COX23, mitochondrial
产物cytochrome c oxidase-assembly factor COX23%2C mitochondrial
ArabidopsisAT1G02160 (AT1G02160)
Cox19 family protein (CHCH motif) [Source:NCBI gene (formerly Entrezgene);Acc:839554]
identity=72.9; qcov=0.972; evalue=5.54e-28; confidence=medium
RiceOs04g0665000
-
identity=73.7; qcov=0.792; evalue=1.53e-24; confidence=medium
GO-
KEGG-
PfamPF06747 (CHCH)
InterPro-
eggNOG-
NRGeneID:131016779

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057801486.1
2 Mitochondrion intermembrane space Mitochondrion intermembrane space 1.00000 XP_057801486.1
3 Nucleus 细胞核 0.00000 XP_057801486.1
4 Chromosome 染色体 0.00000 XP_057801486.1
5 Centromere 着丝粒 0.00000 XP_057801486.1

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变,或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057801486.1
75 aa
N
1
38
75
CHCH
C
PF06747 CHCH 27-56 aa
XP_057801487.1
72 aa
N
1
36
72
CHCH
C
PF06747 CHCH 27-56 aa
XP_057801488.1
72 aa
N
1
36
72
CHCH
C
PF06747 CHCH 27-56 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057801486.1 Pfam PF06747 CHCH Domain 27 56 3.3e-07 31.0 CHCH domain
XP_057801487.1 Pfam PF06747 CHCH Domain 27 56 2.4e-07 31.4 CHCH domain
XP_057801488.1 Pfam PF06747 CHCH Domain 27 56 2.4e-07 31.4 CHCH domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057945504.1
GGGCCAAGCTAAAGCCCAAGAGTTTAATAGGTGGTAGATTTTAATACCATAAACAGAAAAAATACAAAAAGAAGAGAAGTTTGAACGTAGAGAATAGGTGAAAGATGACGTCGTCGAAAGCGCAGTCGCCGGCGTATCCTAGCGCTGCTCGTATCTCCGACTCTGATTGCTTCCCTGCTTACACCGCCTCCCTTAAATGTTTAGAAGAATACAGCAATGAGAAGAGTAAATGCCAAGAACATTTTGACATTTACAAGGAA...
XM_057945503.1
TTTTAATACCATAAACAGAAAAAATACAAAAAGAAGAGAAGTTTGAACGTAGAGAATAGGTGAAAGATGACGTCGTCGAAAGCGCAGTCGCCGGCGTATCCTAGCGCTGCTCGTATCTCCGACTCTGATTGCTTCCCTGCTTACACCGCCTCCCTTAAATGTTTAGAAGAATACAGCAATGAGAAGAGTAAATGCCAAGAACATTTTGACATTTACAAGGAATGCAGAAAAAAGGAGGTAAGGGTTCTACTGTATGAGAA...

CDS

3 records

下载 CDS FASTA
LOC131016779
ATGACGTCGTCGAAAGCGCAGTCGCCGGCGTATCCTAGCGCTGCTCGTATCTCCGACTCTGATTGCTTCCCTGCTTACACCGCCTCCCTTAAATGTTTAGAAGAATACAGCAATGAGAAGAGTAAATGCCAAGAACATTTTGACATTTACAAGGAATGCAGAAAAAAGGAGAGGGAAGCACGGCTGGAACGCAATAGGAGTCGGTCTCTCTTCTCATGA
LOC131016779
ATGACGTCGTCGAAAGCGCAGTCGCCGGCGTATCCTAGCGCTGCTCGTATCTCCGACTCTGATTGCTTCCCTGCTTACACCGCCTCCCTTAAATGTTTAGAAGAATACAGCAATGAGAAGAGTAAATGCCAAGAACATTTTGACATTTACAAGGAATGCAGAAAAAAGGAGAGGGAAGCACGGCTGGAACGCAATAGGAGTCGGTCTCTCTTCTCATGA

Protein

3 records

下载 Protein FASTA
XP_057801486.1
MTSSKAQSPAYPSAARISDSDCFPAYTASLKCLEEYSNEKSKCQEHFDIYKECRKKEVRVLLYEKCFFIFSYVDC
XP_057801487.1
MTSSKAQSPAYPSAARISDSDCFPAYTASLKCLEEYSNEKSKCQEHFDIYKECRKKEREARLERNRSRSLFS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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