Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002629`

染色体: Chr03 坐标: 41740960-41743321 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002629`
名称	SmilChr03G002629
描述	probable serine/threonine-protein kinase PBL19
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	41740960 - 41743321 / `+`

ID 对照

NCBI Gene ID	`LOC131015715`
GeneID	`131015715`
locus_tag	`-`
NCBI Name	`LOC131015715`
原始查询	`SmilChr03G002629`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable serine/threonine-protein kinase PBL19
产物	probable serine/threonine-protein kinase PBL19
Arabidopsis	`AT5G47070` (AT5G47070) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834753] identity=54; qcov=0.988; evalue=4.27e-152; confidence=high
Rice	`Os02g0650500` (OsRLCK80) - identity=62.9; qcov=0.871; evalue=1.7e-167; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131015715

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057800118.1`
2	Cytosol	细胞质基质	0.20000	`XP_057800118.1`
3	Nucleus	细胞核	0.00000	`XP_057800118.1`
4	Chromosome	染色体	0.00000	`XP_057800118.1`
5	Centromere	着丝粒	0.00000	`XP_057800118.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:41741419`	`C`	`CA`	1bp_insertion	frameshift_variant	2	B128,B17
`Chr3:41741419`	`C`	`CA`	1bp_insertion	CDS_variant	2	B128,B17
`Chr3:41741524`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A13,C13
`Chr3:41741555`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B30
`Chr3:41741555`	`GC`	`G`	1bp_deletion	CDS_variant	1	B30
`Chr3:41742268`	`C`	`T`	EMS_canonical_SNV	stop_gained	25	A19,B102,B108,B122,B124,B128,B131,B33,B36,B37,B46,B51,B58,B60,B74,B95,C24,C32,C42,C45,C47,C55,C63,C68,D5
`Chr3:41742279`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B28,B43,B65,B80,C37
`Chr3:41742289`	`C`	`CA`	1bp_insertion	frameshift_variant	3	B113,B20,B27
`Chr3:41742289`	`C`	`CA`	1bp_insertion	CDS_variant	3	B113,B20,B27
`Chr3:41742309`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr3:41742348`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B115,B4,C10,C73
`Chr3:41742352`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B46,B56,B96

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800118.1

423 aa

212

423

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 74-352 aa PF07714 PK_Tyr_Ser-Thr 77-354 aa

XP_057800119.1

433 aa

216

433

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 84-362 aa PF07714 PK_Tyr_Ser-Thr 87-364 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800118.1`	Pfam	`PF00069`	Pkinase	Domain	74	352	9.7e-46	157.0	Protein kinase domain
`XP_057800118.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	77	354	2.5e-46	158.8	Protein tyrosine and serine/threonine kinase
`XP_057800119.1`	Pfam	`PF00069`	Pkinase	Domain	84	362	1e-45	156.9	Protein kinase domain
`XP_057800119.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	87	364	2.6e-46	158.7	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944135.1
TGTCCATCTTCTTTGGGACAGAGATGATCTTTCTAGAAGTTGGTGTTGTAGGAATTCAACGTCACCACCCTCGCCTACCAAATCAACCTTTTTTCCAAACAAAAGTGAAAATATAATTCGACGAGAGAGAGAGAGAGAGAGAGAGGTTATATATTTATATGAAGCGACGCAAAACCAGGGGAGAAACAAACGAAACTCTGATGATATAAATATTTTAATTTGATCTTCAAATCCTTACGTTGAAAGTGAAGCGGTTGAAC...

XM_057944136.1
CTTTCTAGAAGTTGGTGTTGTAGGAATTCAACGTCACCACCCTCGCCTACCAAATCAACCTTTTTTCCAAACAAAAGTGAAAATATAATTCGACGAGAGAGAGAGAGAGAGAGAGAGGTTATATATTTATATGAAGCGACGCAAAACCAGGGGAGAAACAAACGAAACTCTGATGATATAAATATTTTAATTTGATCTTCAAATCCTTACGTTGAAAGTGAAGCGGTTGAACCTCACCCAGACGGAAATATGCCTTTGAG...

CDS

2 records

下载 CDS FASTA

LOC131015715
ATGCATGATTTGAATCTGGAAGACAAGATAATGAAGTGTTTCTACTACTTCAAGGATAGGAGTAGGACCCGATTGCAGAAATCGGCTCCAATCCTCAAAGATGACACCAAATCTGATGTCTCTGACGCTGAGAGGATCACCAAATCTTCGTGCTCCGCTACTAGCATACCCGAATTATACTCTGAGAAGGCTCCCAATTTGAGAGTTTTCAGCTTCTCTGAGCTCAAGCACGCCACCAATAACTTCAGCCGATTGCTTAA...

LOC131015715
ATGAAGTGTTTCTACTACTTCAAGGATAGGAGTAGGACCCGATTGCAGAAATCGGCTCCAATCCTCAAAGATGACACCAAATCTGATGTCTCTGACGCTGAGAGGATCACCAAATCTTCGTGCTCCGCTACTAGCATACCCGAATTATACTCTGAGAAGGCTCCCAATTTGAGAGTTTTCAGCTTCTCTGAGCTCAAGCACGCCACCAATAACTTCAGCCGATTGCTTAAGATTGGCGAAGGCGGTTTCGGGAGTGTTTA...

Protein

2 records

下载 Protein FASTA

XP_057800118.1
MKCFYYFKDRSRTRLQKSAPILKDDTKSDVSDAERITKSSCSATSIPELYSEKAPNLRVFSFSELKHATNNFSRLLKIGEGGFGSVYKGTIKPLDGNSTDPIVVAIKKLNRDGFQGHKQWVAEVQFLGVVEHPNLVKLIGYCGVDGERGIQRLLVYEYMPNKSLEDHLFNKAYPPLSWDARLQIVLGAAQGLAYLHEDLEIQVIYRDFKSSNVLLDEQLKAKLSDFGLAREGPEAGHSHVSTAVVGTYGYAAPDYIETGH...

XP_057800119.1
MHDLNLEDKIMKCFYYFKDRSRTRLQKSAPILKDDTKSDVSDAERITKSSCSATSIPELYSEKAPNLRVFSFSELKHATNNFSRLLKIGEGGFGSVYKGTIKPLDGNSTDPIVVAIKKLNRDGFQGHKQWVAEVQFLGVVEHPNLVKLIGYCGVDGERGIQRLLVYEYMPNKSLEDHLFNKAYPPLSWDARLQIVLGAAQGLAYLHEDLEIQVIYRDFKSSNVLLDEQLKAKLSDFGLAREGPEAGHSHVSTAVVGTYGY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器