Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002634`

染色体: Chr03 坐标: 41862860-41866517 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002634`
名称	SmilChr03G002634
描述	probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	41862860 - 41866517 / `+`

ID 对照

NCBI Gene ID	`LOC131015825`
GeneID	`131015825`
locus_tag	`-`
NCBI Name	`LOC131015825`
原始查询	`SmilChr03G002634`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase
产物	probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1%2C3-glucosyltransferase
Arabidopsis	`AT2G44660` (AT2G44660) ALG6, ALG8 glycosyltransferase family [Source:NCBI gene (formerly Entrezgene);Acc:819074] identity=71.7; qcov=0.899; evalue=0; confidence=high
Rice	`Os02g0688500` - identity=64.9; qcov=0.887; evalue=6.31e-156; confidence=high
GO	GO:0005789 (endoplasmic reticulum membrane); GO:0006487 (protein N-linked glycosylation); GO:0006490 (GO:0006490); GO:0042283 (dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase activity)
KEGG	smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF03155 (Alg6_Alg8)
InterPro	-
eggNOG	-
NR	GeneID:131015825

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057800243.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057800243.1`
3	Nucleus	细胞核	0.00000	`XP_057800243.1`
4	Chromosome	染色体	0.00000	`XP_057800243.1`
5	Centromere	着丝粒	0.00000	`XP_057800243.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:41863193`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:41863268`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B69,C23,C3
`Chr3:41863280`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A2,C38,D11
`Chr3:41863292`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr3:41863302`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A4,B42,B43
`Chr3:41863313`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B11,B89
`Chr3:41863374`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B1,B135,B7,B94
`Chr3:41863412`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr3:41864305`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B105,C34,D10
`Chr3:41864963`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B136,B52,C55,D8
`Chr3:41865979`	`G`	`GA`	1bp_insertion	frameshift_variant	1	B122
`Chr3:41865979`	`G`	`GA`	1bp_insertion	CDS_variant	1	B122

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800243.1

519 aa

260

519

Alg6_Alg8

PF03155 Alg6_Alg8 22-510 aa

XP_057800244.1

424 aa

212

424

Alg6_Alg8

PF03155 Alg6_Alg8 22-420 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800243.1`	Pfam	`PF03155`	Alg6_Alg8	Family	22	510	6.1e-158	527.5	ALG6, ALG8 glycosyltransferase family
`XP_057800244.1`	Pfam	`PF03155`	Alg6_Alg8	Family	22	420	1.2e-134	450.6	ALG6, ALG8 glycosyltransferase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944260.1
GTCGTGGATAGCATGAACGAGCATATTGCATATACTAGTTTAGCCAAATAAGAAGGATTTGGAAGGGCCAAGTGAGCAGAGAGCAGCTATGACGAAACCCCCAAACAACTGCCACTACACTGGCGGTGTGTGGTGGCCGGCCCTCGTGGCCGCCGCCGTGAAACTCCTCCTCATTCCCGCCTACCACAGCACTGATTTCGAGGTTCACCGCCACTGGCTCGCCCTCACTCATTCCCTCCCACTCTCCCGCTGGTACTCCG...

XM_057944261.1
GAACGAGCATATTGCATATACTAGTTTAGCCAAATAAGAAGGATTTGGAAGGGCCAAGTGAGCAGAGAGCAGCTATGACGAAACCCCCAAACAACTGCCACTACACTGGCGGTGTGTGGTGGCCGGCCCTCGTGGCCGCCGCCGTGAAACTCCTCCTCATTCCCGCCTACCACAGCACTGATTTCGAGGTTCACCGCCACTGGCTCGCCCTCACTCATTCCCTCCCACTCTCCCGCTGGTACTCCGACTCCACCAGCCAG...

CDS

2 records

下载 CDS FASTA

LOC131015825
ATGACGAAACCCCCAAACAACTGCCACTACACTGGCGGTGTGTGGTGGCCGGCCCTCGTGGCCGCCGCCGTGAAACTCCTCCTCATTCCCGCCTACCACAGCACTGATTTCGAGGTTCACCGCCACTGGCTCGCCCTCACTCATTCCCTCCCACTCTCCCGCTGGTACTCCGACTCCACCAGCCAGTGGACCCTCGATTACCCTCCTTTCTTCGCCTACTTCGAGAAATTCCTCTCCATCTTCGCCGCCAGGGTGGATCC...

Protein

2 records

下载 Protein FASTA

XP_057800243.1
MTKPPNNCHYTGGVWWPALVAAAVKLLLIPAYHSTDFEVHRHWLALTHSLPLSRWYSDSTSQWTLDYPPFFAYFEKFLSIFAARVDPLMTDLYRGLDYASSRAILFQRLSVALSDVLLVYSAYRLTKKRNFRDLERLLICALVIWAPGLFLVDHMHFQYNGFLLGMLLLSISFLEEGRDLMGGFIFAVLLCFKHLFAVAAPVYFVYLFRHYCRGGFLKGFARLVLMGCVVLAVFAAAYLPFWHYGQIREVLQRMFPFGRG...

XP_057800244.1
MTKPPNNCHYTGGVWWPALVAAAVKLLLIPAYHSTDFEVHRHWLALTHSLPLSRWYSDSTSQWTLDYPPFFAYFEKFLSIFAARVDPLMTDLYRGLDYASSRAILFQRLSVALSDVLLVYSAYRLTKKRNFRDLERLLICALVIWAPGLFLVDHMHFQYNGFLLGMLLLSISFLEEGRDLMGGFIFAVLLCFKHLFAVAAPVYFVYLFRHYCRGGFLKGFARLVLMGCVVLAVFAAAYLPFWHYGQIREVLQRMFPFGRG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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