Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr03G002654`

Chromosome: Chr03 Coordinates: 42190409-42201937 Strand: - Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr03G002654`
Name	SmilChr03G002654
Description	very-long-chain aldehyde decarbonylase CER1-like
Chromosome / SeqID	Chr03 / NC_080389.1
Coordinates and Strand	42190409 - 42201937 / `-`

ID Mapping

NCBI Gene ID	`LOC131015843`
GeneID	`131015843`
locus_tag	`-`
NCBI Name	`LOC131015843`
Original query	`SmilChr03G002654`

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Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	very-long-chain aldehyde decarbonylase CER1-like
Product	very-long-chain aldehyde decarbonylase CER1-like
Arabidopsis	`AT1G02205` (CER1) Fatty acid hydroxylase superfamily [Source:NCBI gene (formerly Entrezgene);Acc:837602] identity=61; qcov=0.984; evalue=0; confidence=high
Rice	`Os02g0621300` (OsCER1) - identity=59.2; qcov=0.978; evalue=0; confidence=high
GO	GO:0005506 (iron ion binding); GO:0008610 (lipid biosynthetic process); GO:0016491 (oxidoreductase activity)
KEGG	smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF04116 (FA_hydroxylase); PF12076 (CER1-like_C)
InterPro	-
eggNOG	-
NR	GeneID:131015843

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057800270.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057800270.1`
3	Nucleus	细胞核	0.00000	`XP_057800270.1`
4	Chromosome	染色体	0.00000	`XP_057800270.1`
5	Centromere	着丝粒	0.00000	`XP_057800270.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr3:42190652`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr3:42190895`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr3:42190907`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,B38,B39,B91,D7
`Chr3:42190908`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr3:42191150`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr3:42191331`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C50
`Chr3:42191331`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr3:42191344`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr3:42191361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr3:42191375`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr3:42191399`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr3:42191406`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50

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Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057800270.1

631 aa

316

631

FA_hydroxylase

CER1-like_C

PF04116 FA_hydroxylase 133-272 aa PF12076 CER1-like_C 451-614 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057800270.1`	Pfam	`PF04116`	FA_hydroxylase	Domain	133	272	2e-20	74.3	Fatty acid hydroxylase
`XP_057800270.1`	Pfam	`PF12076`	CER1-like_C	Domain	451	614	4.7e-71	238.6	CER1-like, C-terminal domain

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057944287.1
AACCATTGTTTTGCTATATATATGTAGTGCTCATTGTGCCAAACTTCAAGTTGGGGAAGAAAGCTGACCAGTTGATGAAAAATGGCTACAAAACCAGGGATTCTCACTGAGTGGCCATGGACATGGCTTGGGAACTACAAGTACGTGGTATTGGCTCCCTCAGTAGCATATTCGGTATACTCGTACATTGTGAATGGTGAAAATGAGAGAGATTTGTCAAATCTCTTGATATTACCTGCACTACTATGGAGGATGGTGCA...

CDS

1 records

Download CDS FASTA

LOC131015843
ATGGCTACAAAACCAGGGATTCTCACTGAGTGGCCATGGACATGGCTTGGGAACTACAAGTACGTGGTATTGGCTCCCTCAGTAGCATATTCGGTATACTCGTACATTGTGAATGGTGAAAATGAGAGAGATTTGTCAAATCTCTTGATATTACCTGCACTACTATGGAGGATGGTGCACAATCAAATGTGGATTTCACTCTCCCGTTACCGAACAGCCAAAGGGAGTAACAGGATAGTTGACAAGAGCATTGAATTCGA...

Protein

1 records

Download Protein FASTA

XP_057800270.1
MATKPGILTEWPWTWLGNYKYVVLAPSVAYSVYSYIVNGENERDLSNLLILPALLWRMVHNQMWISLSRYRTAKGSNRIVDKSIEFEQVDRERNWDDQIILSGLMIYSVSMYYKAAQHLTWWRTDGMIWTFMVHAGPVEFLYYWLHRALHHHFLYSRYHSHHHSSIVTEPITSVIHPFAEHIAYFLLFSLPFFTTIYMKNMSILSVVLYLTYIDFMNNMGHCNFECIPKRLFSIFPPLKYLMYTPSYHSLHHTQFRTNYS...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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