Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002674`

染色体: Chr03 坐标: 42453681-42460868 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002674`
名称	SmilChr03G002674
描述	3-hydroxyisobutyryl-CoA hydrolase 1-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	42453681 - 42460868 / `-`

ID 对照

NCBI Gene ID	`LOC131015861`
GeneID	`131015861`
locus_tag	`-`
NCBI Name	`LOC131015861`
原始查询	`SmilChr03G002674`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3-hydroxyisobutyryl-CoA hydrolase 1-like
产物	3-hydroxyisobutyryl-CoA hydrolase 1-like
Arabidopsis	`AT5G65940` (CHY1) beta-hydroxyisobutyryl-CoA hydrolase 1 [Source:NCBI gene (formerly Entrezgene);Acc:836724] identity=73.7; qcov=0.997; evalue=0; confidence=high
Rice	`Os12g0264500` - identity=68.1; qcov=0.964; evalue=0; confidence=high
GO	GO:0003860 (3-hydroxyisobutyryl-CoA hydrolase activity); GO:0006574 (L-valine catabolic process)
KEGG	smil00280 (Valine, leucine and isoleucine degradation - Salvia miltiorrhiza (redroot sage)); smil00410 (beta-Alanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00640 (Propanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00378 (ECH_1); PF16113 (ECH_2)
InterPro	-
eggNOG	-
NR	GeneID:131015861

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	1.00000	`XP_057800284.1`
2	Cytosol	细胞质基质	0.60000	`XP_057800284.1`
3	Nucleus	细胞核	0.00000	`XP_057800284.1`
4	Chromosome	染色体	0.00000	`XP_057800284.1`
5	Centromere	着丝粒	0.00000	`XP_057800284.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:42453991`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C55,D8
`Chr3:42454004`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C58,C85
`Chr3:42454899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B44,B66,C12
`Chr3:42456988`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B6,C3,C34,C58
`Chr3:42458517`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B37,C60
`Chr3:42459469`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B53,B66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800284.1

380 aa

190

380

ECH_2

ECH_1

PF16113 ECH_2 20-353 aa PF00378 ECH_1 24-225 aa

XP_057800285.1

358 aa

179

358

ECH_2

ECH_1

PF16113 ECH_2 1-331 aa PF00378 ECH_1 2-201 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800284.1`	Pfam	`PF16113`	ECH_2	Domain	20	353	3.2e-127	425.3	Enoyl-CoA hydratase/isomerase
`XP_057800284.1`	Pfam	`PF00378`	ECH_1	Domain	24	225	4.2e-27	95.8	Enoyl-CoA hydratase/isomerase
`XP_057800285.1`	Pfam	`PF16113`	ECH_2	Domain	1	331	1.7e-126	423.0	Enoyl-CoA hydratase/isomerase
`XP_057800285.1`	Pfam	`PF00378`	ECH_1	Domain	2	201	5.7e-27	95.4	Enoyl-CoA hydratase/isomerase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944301.1
CACTGTTCACCAACTCTAATTTACAGTAGCGAAGAGGAGATTGTTGGAGGAAGCATTCACGTCAAATTAACGCTGGCCGCTAGAGTAACTGCTGGAGTTGCTCTAAATATTTTGAAAATTGGCTGTAGATAAAATGGGTTCGGTTTTCGAGTAAAAACACAATCGCGATTTCTTGGAGTGGAAATTCAGTGAAAGGCAGCTGATAGTCGAATAACCGATTCGTGTTAGTATTGTTTTTGCTGATTGCTAATTAGCCCATT...

XM_057944302.1
TAATCTCTTGTTACATCTCCAAGTCGTTTTATAACTATCTGGTTTTTTCCGGCATACAATTAAGAAATGGGCTTTGATTAAATTCTTTTGCCCATATGAACTGAAAATGTTTTGGTGGAACAGAGATCATGTGGGAGGATTTTCATGTTGAACAGGCCTAAGCAGCTCAATGCACTTTCAAATGTAATGGTGTCACGTCTGTTGGAGCTTTTTCTTGCTTGCAGAGAAGATTCCTCTGTCAAATTCATAATTGTAAAGGG...

CDS

2 records

下载 CDS FASTA

LOC131015861
ATGGCTTCTACAAATGGAGAAACCGATCAGGTTTTGGTGGAACAGAGATCATGTGGGAGGATTTTCATGTTGAACAGGCCTAAGCAGCTCAATGCACTTTCAAATGTAATGGTGTCACGTCTGTTGGAGCTTTTTCTTGCTTGCAGAGAAGATTCCTCTGTCAAATTCATAATTGTAAAGGGAAAAGGGAGAGCATTTTGTGCTGGAGGTGATGTAGCGGCAGTTGTTCGTGATATTAAACAAGGTAATTGGAAGTTAGG...

LOC131015861
ATGTTGAACAGGCCTAAGCAGCTCAATGCACTTTCAAATGTAATGGTGTCACGTCTGTTGGAGCTTTTTCTTGCTTGCAGAGAAGATTCCTCTGTCAAATTCATAATTGTAAAGGGAAAAGGGAGAGCATTTTGTGCTGGAGGTGATGTAGCGGCAGTTGTTCGTGATATTAAACAAGGTAATTGGAAGTTAGGTGCAGAGTATTTCAGAAAGGAGTTCACAATGAACTATGTCATAGCTACATACCGCAAACCCCAGGT...

Protein

2 records

下载 Protein FASTA

XP_057800284.1
MASTNGETDQVLVEQRSCGRIFMLNRPKQLNALSNVMVSRLLELFLACREDSSVKFIIVKGKGRAFCAGGDVAAVVRDIKQGNWKLGAEYFRKEFTMNYVIATYRKPQVSILNGIVMGGGAGVSVHGRFRIATENSLFAMPETALGLFPDIGASYFLSRLPGFFGEFVGLTGARLDGAEMLACGLATHFVESERLPLLEEALVKANSSDPVVISTIIEEFSHAPNLKRNSAYHRLDVINKCFSRRTIEDIIAALEKVVAD...

XP_057800285.1
MLNRPKQLNALSNVMVSRLLELFLACREDSSVKFIIVKGKGRAFCAGGDVAAVVRDIKQGNWKLGAEYFRKEFTMNYVIATYRKPQVSILNGIVMGGGAGVSVHGRFRIATENSLFAMPETALGLFPDIGASYFLSRLPGFFGEFVGLTGARLDGAEMLACGLATHFVESERLPLLEEALVKANSSDPVVISTIIEEFSHAPNLKRNSAYHRLDVINKCFSRRTIEDIIAALEKVVADKKDDWISSTIQSLKKASPISLK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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