当前解析结果
SmilChr03G002675| 统一新 Gene ID | SmilChr03G002675 |
|---|---|
| 名称 | SmilChr03G002675 |
| 描述 | 60S ribosomal protein L10-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 42462635 - 42463351 / - |
| NCBI Gene ID | LOC131015864 |
|---|---|
| GeneID | 131015864 |
| locus_tag | - |
| NCBI Name | LOC131015864 |
| 原始查询 | SmilChr03G002675 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 60S ribosomal protein L10-like |
| 产物 | 60S ribosomal protein L10-like |
| Arabidopsis | AT1G26910 (RPL10B)Ribosomal protein L16p/L10e family protein [Source:NCBI gene (formerly Entrezgene);Acc:837036] identity=82.7; qcov=0.995; evalue=3.33e-137; confidence=high |
| Rice | Os05g0169100 (SG12)- identity=83.1; qcov=0.991; evalue=1.79e-136; confidence=high |
| GO | GO:0000027 (ribosomal large subunit assembly); GO:0003735 (structural constituent of ribosome); GO:0005840 (ribosome); GO:0006412 (translation); GO:0022625 (cytosolic large ribosomal subunit) |
| KEGG | smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00252 (Ribosomal_L16) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015864 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057800290.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057800290.1 |
| 3 | Nucleolus | 核仁 | 0.20000 | XP_057800290.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057800290.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057800290.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:42462669 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr3:42462704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B40,B44,B76,C2 |
Chr3:42462713 |
C |
CG |
1bp_insertion | frameshift_variant | 84 | A1,A11,A13,A14,A19,A21,A5,A6,A9,B104,B111,B115,B117,B120,B122,B126,B127,B13,B134,B137,B138,B139,B14,B140,B16,B17,B2,B21,B27,B28,B32,B33,B34,B35,B41,B45,B46,B50,B51,B52,B54,B56,B61,B64,B69,B70,B74,B75,B82,B84,B86,B87,B89,B96,B99,C14,C15,C17,C18,C2,C23,C3,C32,C33,C36,C38,C4,C50,C52,C54,C55,C6,C61,C64,C65,C68,C72,C73,C84,D11,D5,D6,D8,D9 |
Chr3:42462719 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B100,B102,C48,C53 |
Chr3:42462749 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr3:42462760 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B37,B53 |
Chr3:42462765 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,B8 |
Chr3:42462846 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr3:42462862 |
ACG |
A |
2bp_deletion | frameshift_variant | 1 | B66 |
Chr3:42462862 |
ACG |
A |
2bp_deletion | CDS_variant | 1 | B66 |
Chr3:42462879 |
G |
A |
EMS_canonical_SNV | stop_gained | 35 | A24,A3,A4,A5,A9,B107,B126,B21,B22,B28,B45,B52,B62,B65,B66,B78,B89,C1,C11,C14,C15,C18,C22,C24,C30,C43,C45,C54,C56,C61,C69,C74,C76,C83,C84 |
Chr3:42462881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A9,B107,B22,C43 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800290.1PF00252
Ribosomal_L16 12-166 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800290.1 |
Pfam | PF00252 |
Ribosomal_L16 | Domain | 12 | 166 | 6.5e-31 | 107.7 | Ribosomal protein L16p/L10e |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。