当前解析结果
SmilChr03G002681| 统一新 Gene ID | SmilChr03G002681 |
|---|---|
| 名称 | SmilChr03G002681 |
| 描述 | ent-kaurenoic acid oxidase 1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 42593232 - 42596144 / + |
| NCBI Gene ID | LOC131015860 |
|---|---|
| GeneID | 131015860 |
| locus_tag | - |
| NCBI Name | LOC131015860 |
| 原始查询 | SmilChr03G002681 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ent-kaurenoic acid oxidase 1-like |
| 产物 | ent-kaurenoic acid oxidase 1-like |
| Arabidopsis | AT1G05160 (CYP88A3)cytochrome P450, family 88, subfamily A, polypeptide 3 [Source:NCBI gene (formerly Entrezgene);Acc:839311] identity=71.4; qcov=0.986; evalue=0; confidence=high |
| Rice | Os06g0110000 (OsKAO)- identity=55.5; qcov=0.989; evalue=0; confidence=high |
| GO | GO:0005506 (iron ion binding); GO:0005783 (endoplasmic reticulum); GO:0007275 (multicellular organism development); GO:0010268 (brassinosteroid homeostasis); GO:0016125 (sterol metabolic process); GO:0016132 (brassinosteroid biosynthetic process); GO:0020037 (heme binding); GO:0051777 (ent-kaurenoic acid monooxygenase activity) |
| KEGG | smil00904 (Diterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015860 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057800283.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057800283.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057800283.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057800283.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057800283.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:42593443 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B13 |
Chr3:42593443 |
GT |
G |
1bp_deletion | CDS_variant | 1 | B13 |
Chr3:42593457 |
T |
TA |
1bp_insertion | frameshift_variant | 2 | B84,B89 |
Chr3:42593457 |
T |
TA |
1bp_insertion | CDS_variant | 2 | B84,B89 |
Chr3:42593460 |
GGA |
G |
2bp_deletion | frameshift_variant | 4 | A16,B136,B40,C29 |
Chr3:42593460 |
GGA |
G |
2bp_deletion | CDS_variant | 4 | A16,B136,B40,C29 |
Chr3:42593465 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr3:42593523 |
TC |
T |
1bp_deletion | frameshift_variant | 18 | A13,A19,A22,B101,B12,B121,B123,B140,B16,B55,B63,B83,C28,C34,C63,C67,C74,D4 |
Chr3:42594237 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A15,A3 |
Chr3:42594294 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,C55 |
Chr3:42594347 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | C25,C27,C9 |
Chr3:42594347 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C25,C27,C9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800283.1PF00067
p450 29-441 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800283.1 |
Pfam | PF00067 |
p450 | Domain | 29 | 441 | 9.7e-60 | 203.3 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。