Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002688`

染色体: Chr03 坐标: 42753358-42757429 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002688`
名称	SmilChr03G002688
描述	uric acid degradation bifunctional protein TTL-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	42753358 - 42757429 / `+`

ID 对照

NCBI Gene ID	`LOC131015874`
GeneID	`131015874`
locus_tag	`-`
NCBI Name	`LOC131015874`
原始查询	`SmilChr03G002688`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uric acid degradation bifunctional protein TTL-like
产物	uric acid degradation bifunctional protein TTL-like
Arabidopsis	`AT5G58220` (TTL) transthyretin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835934] identity=58; qcov=0.985; evalue=4.05e-129; confidence=high
Rice	`Os03g0390700` - identity=58.4; qcov=0.906; evalue=2.42e-126; confidence=high
GO	GO:0006144 (purine nucleobase metabolic process); GO:0016831 (carboxy-lyase activity); GO:0033971 (hydroxyisourate hydrolase activity)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00576 (Transthyretin); PF09349 (OHCU_decarbox)
InterPro	-
eggNOG	-
NR	GeneID:131015874

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	1.00000	`XP_057800301.1`
2	Cytoplasm	细胞质	0.80000	`XP_057800300.1`
3	Cytosol	细胞质基质	0.40000	`XP_057800300.1`
4	Mitochondrion	线粒体	0.40000	`XP_057800300.1`
5	Nucleus	细胞核	0.00000	`XP_057800300.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:42753630`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A7,B66,B80
`Chr3:42753640`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A7,B80
`Chr3:42753660`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A7,B80
`Chr3:42755977`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B53,B66
`Chr3:42756826`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C34,C58
`Chr3:42756842`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr3:42756847`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C3,C34,C58
`Chr3:42756875`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A7,B40,C2
`Chr3:42757073`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A7,B80,C42
`Chr3:42757163`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr3:42757178`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,B100,C53,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800300.1

330 aa

165

330

OHCU_decarbox

Transthyretin

PF09349 OHCU_decarbox 11-155 aa PF00576 Transthyretin 211-329 aa

XP_057800301.1

329 aa

164

329

OHCU_decarbox

Transthyretin

PF09349 OHCU_decarbox 11-155 aa PF00576 Transthyretin 210-328 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800300.1`	Pfam	`PF09349`	OHCU_decarbox	Domain	11	155	3.6e-33	116.0	OHCU decarboxylase
`XP_057800300.1`	Pfam	`PF00576`	Transthyretin	Domain	211	329	1.1e-32	113.6	HIUase/Transthyretin family
`XP_057800301.1`	Pfam	`PF09349`	OHCU_decarbox	Domain	11	155	3.6e-33	116.0	OHCU decarboxylase
`XP_057800301.1`	Pfam	`PF00576`	Transthyretin	Domain	210	328	1.1e-32	113.6	HIUase/Transthyretin family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944317.1
AGTATTTTATTTTGGGCGAGAGATTTTCAGTTTCCTCAACAAAACCAAAAACTTGTTCAGCTTCGGAAGATTGAGTTTCAGAGAGTAGTCCCACAGTTCCACTACTCAAATCAACAAACGGAAAACTCTCTTTCCCAAACCAAATTCACCGTTTAAGAATCGAACCCAATCATCGAATCGATGGATTCGCCTAGTGAGAAGGAGTGGCTAGCATGCTGTGGGAGCGCCAAATTTGCTCAAGAAATGGCCTCTGCCGCTCC...

XM_057944318.1
GTATTTTATTTTGGGCGAGAGATTTTCAGTTTCCTCAACAAAACCAAAAACTTGTTCAGCTTCGGAAGATTGAGTTTCAGAGAGTAGTCCCACAGTTCCACTACTCAAATCAACAAACGGAAAACTCTCTTTCCCAAACCAAATTCACCGTTTAAGAATCGAACCCAATCATCGAATCGATGGATTCGCCTAGTGAGAAGGAGTGGCTAGCATGCTGTGGGAGCGCCAAATTTGCTCAAGAAATGGCCTCTGCCGCTCCC...

CDS

2 records

下载 CDS FASTA

LOC131015874
ATGGATTCGCCTAGTGAGAAGGAGTGGCTAGCATGCTGTGGGAGCGCCAAATTTGCTCAAGAAATGGCCTCTGCCGCTCCCTTCTTCAATCACCAACAAGCCGTCGATGCTGCCAGGGATATCTGGTTCAATAAAGTAGATGTGAACGGATGGCTAGAAGCGTTTGCTGCGCATCCTGCAATCGGCGAAAGCCCTTCCAAAACCGTCAAAAGTCCAACCAGTGCTCAGTGGAGCAAGGGAGAGCAATCGACTGCTTTAGC...

Protein

2 records

下载 Protein FASTA

XP_057800300.1
MDSPSEKEWLACCGSAKFAQEMASAAPFFNHQQAVDAARDIWFNKVDVNGWLEAFAAHPAIGESPSKTVKSPTSAQWSKGEQSTALATATDATLQELYEWNARYRQKFGFVFLICASGRSTPEILAEIKKRYHHRPIIEFELAAKEQMKITELRITKLFPAYATAASITKTPHNADVLTKAGEDRMSVIGGHLATAAAEPSGGFTRTRPPITTHILDVARGAPASGVDVRLEMWADKQSRPLFGEVDSDCWKLVGRSSTD...

XP_057800301.1
MDSPSEKEWLACCGSAKFAQEMASAAPFFNHQQAVDAARDIWFNKVDVNGWLEAFAAHPAIGESPSKTVKSPTSAQWSKGEQSTALATATDATLQELYEWNARYRQKFGFVFLICASGRSTPEILAEIKKRYHHRPIIEFELAAKEQMKITELRITKLFPAYATAASITKTPHNADVLTKAGDRMSVIGGHLATAAAEPSGGFTRTRPPITTHILDVARGAPASGVDVRLEMWADKQSRPLFGEVDSDCWKLVGRSSTDR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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