当前解析结果
SmilChr03G002699| 统一新 Gene ID | SmilChr03G002699 |
|---|---|
| 名称 | SmilChr03G002699 |
| 描述 | uncharacterized SmilChr03G002699 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 42956058 - 42964423 / - |
| NCBI Gene ID | LOC131015881 |
|---|---|
| GeneID | 131015881 |
| locus_tag | - |
| NCBI Name | LOC131015881 |
| 原始查询 | SmilChr03G002699 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | signal transducer, putative (DUF3550/UPF0682) [Source:NCBI gene (formerly Entrezgene);Acc:821234]; symbol=AT3G03570; hit=AT3G03570; species=arabidopsis; confidence=high |
| 产物 | signal transducer, putative (DUF3550/UPF0682) [Source:NCBI gene (formerly Entrezgene);Acc:821234]; symbol=AT3G03570; hit=AT3G03570; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G03570 (AT3G03570)signal transducer, putative (DUF3550/UPF0682) [Source:NCBI gene (formerly Entrezgene);Acc:821234] identity=62.1; qcov=1.01; evalue=0; confidence=high |
| Rice | Os09g0470900 (OJ1595_D08.27-1)- identity=46.4; qcov=0.975; evalue=9.04e-174; confidence=high |
| GO | GO:0003714 (transcription corepressor activity); GO:0005634 (nucleus); GO:0006351 (DNA-templated transcription) |
| KEGG | - |
| Pfam | PF12070 (SCAI) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015881 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057800334.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057800334.1 |
| 3 | Vesicle | 囊泡 | 0.20000 | XP_057800334.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057800334.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057800334.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:42956431 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,C71 |
Chr3:42956510 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B127,C3 |
Chr3:42961145 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B137,C19 |
Chr3:42961307 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:42963362 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,C62 |
Chr3:42963418 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr3:42963423 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B68,B80,C62 |
Chr3:42963466 |
G |
A |
EMS_canonical_SNV | stop_gained | 65 | A11,A13,A16,A19,A20,B103,B104,B118,B122,B124,B128,B131,B134,B137,B139,B16,B17,B20,B24,B26,B29,B30,B31,B36,B40,B49,B50,B54,B60,B64,B65,B79,B81,B86,B87,B90,B92,B98,C13,C15,C24,C25,C30,C35,C4,C48,C49,C5,C50,C53,C55,C57,C58,C6,C60,C7,C72,C73,C74,C75,C76,D3,D5,D8,D9 |
Chr3:42963506 |
CT |
C |
1bp_deletion | frameshift_variant | 7 | A20,B26,B50,C4,C58,C60,C74 |
Chr3:42963510 |
TAA |
* |
2bp_deletion | CDS_variant | 3 | B26,B50,C58 |
Chr3:42963575 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr3:42964008 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B41,B97,C10,C74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800334.1PF12070
SCAI 23-558 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800334.1 |
Pfam | PF12070 |
SCAI | Family | 23 | 558 | 4.6e-196 | 653.5 | Protein SCAI |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。