当前解析结果
SmilChr03G002704| 统一新 Gene ID | SmilChr03G002704 |
|---|---|
| 名称 | SmilChr03G002704 |
| 描述 | RING-H2 finger protein ATL51 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 42985818 - 42986925 / + |
| NCBI Gene ID | LOC131015883 |
|---|---|
| GeneID | 131015883 |
| locus_tag | - |
| NCBI Name | LOC131015883 |
| 原始查询 | SmilChr03G002704 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RING-H2 finger protein ATL51 |
| 产物 | RING-H2 finger protein ATL51 |
| Arabidopsis | AT3G03550 (AT3G03550)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821237] identity=48.4; qcov=0.96; evalue=2.94e-59; confidence=high |
| Rice | Os02g0692000- identity=49.8; qcov=0.879; evalue=1.47e-54; confidence=high |
| GO | GO:0016567 (protein ubiquitination); GO:0016740 (transferase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF12861 (zf-ANAPC11); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015883 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057800337.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057800337.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057800337.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057800337.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057800337.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:42986196 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B38,B39,B91,D7 |
Chr3:42986238 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B119,B44,B64,C24 |
Chr3:42986317 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr3:42986406 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:42986429 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,B140 |
Chr3:42986434 |
A |
AG |
1bp_insertion | frameshift_variant | 1 | C22 |
Chr3:42986434 |
A |
AG |
1bp_insertion | CDS_variant | 1 | C22 |
Chr3:42986435 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr3:42986437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr3:42986439 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr3:42986449 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B37,C60,C71 |
Chr3:42986459 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800337.1PF17123
zf-RING_11 122-151 aa
PF13923
zf-C3HC4_2 122-164 aa
PF12678
zf-rbx1 122-165 aa
PF13639
zf-RING_2 122-165 aa
PF00097
zf-C3HC4 123-164 aa
PF12861
zf-ANAPC11 129-169 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800337.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 122 | 151 | 3.1e-10 | 40.3 | RING-like zinc finger |
XP_057800337.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 122 | 164 | 4.9e-07 | 30.2 | Zinc finger, C3HC4 type (RING finger) |
XP_057800337.1 |
Pfam | PF12678 |
zf-rbx1 | Domain | 122 | 165 | 3.1e-11 | 44.1 | RING-H2 zinc finger domain |
XP_057800337.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 122 | 165 | 6.3e-14 | 52.7 | Ring finger domain |
XP_057800337.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 123 | 164 | 1.6e-06 | 28.6 | Zinc finger, C3HC4 type (RING finger) |
XP_057800337.1 |
Pfam | PF12861 |
zf-ANAPC11 | Domain | 129 | 169 | 8e-07 | 29.7 | Anaphase-promoting complex subunit 11 RING-H2 finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。