当前解析结果
SmilChr03G002705| 统一新 Gene ID | SmilChr03G002705 |
|---|---|
| 名称 | SmilChr03G002705 |
| 描述 | putative acyl-activating enzyme 19 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 43000002 - 43017483 / + |
| NCBI Gene ID | LOC131015884 |
|---|---|
| GeneID | 131015884 |
| locus_tag | - |
| NCBI Name | LOC131015884 |
| 原始查询 | SmilChr03G002705 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative acyl-activating enzyme 19 |
| 产物 | putative acyl-activating enzyme 19 |
| Arabidopsis | AT5G35930 (AT5G35930)AMP-dependent synthetase and ligase family protein [Source:NCBI gene (formerly Entrezgene);Acc:833582] identity=45.5; qcov=0.989; evalue=0; confidence=high |
| Rice | Os06g0111600- identity=42.8; qcov=0.876; evalue=0; confidence=medium |
| GO | GO:0005515 (protein binding); GO:0043041 (amino acid activation for nonribosomal peptide biosynthetic process) |
| KEGG | - |
| Pfam | PF00501 (AMP-binding); PF13193 (AMP-binding_C); PF13360 (PQQ_2); PF13570 (Beta-prop_ACSF4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015884 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057800338.1 |
| 2 | Chloroplast | 叶绿体 | 0.40000 | XP_057800339.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057800338.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057800338.1 |
| 5 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057800340.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:43000073 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B47,B50,B60 |
Chr3:43000212 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr3:43000261 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr3:43001241 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr3:43001242 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr3:43001323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A11,B31,C71 |
Chr3:43001351 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,B80,C42 |
Chr3:43001372 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B110,B68,C25,C5,C9 |
Chr3:43001499 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr3:43001708 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr3:43001929 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B102,B32,B9,D1,D11 |
Chr3:43001961 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B127,C3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800338.1PF00501
AMP-binding 139-462 aa
PF13193
AMP-binding_C 525-603 aa
PF13360
PQQ_2 817-911 aa
PF13570
Beta-prop_ACSF4 822-1164 aa
PF13360
PQQ_2 963-1164 aa
XP_057800339.1PF00501
AMP-binding 139-462 aa
PF13193
AMP-binding_C 525-603 aa
PF13360
PQQ_2 817-911 aa
PF13570
Beta-prop_ACSF4 822-969 aa
XP_057800340.1PF00501
AMP-binding 139-462 aa
PF13193
AMP-binding_C 525-603 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800338.1 |
Pfam | PF00501 |
AMP-binding | Family | 139 | 462 | 2e-46 | 159.3 | AMP-binding enzyme |
XP_057800338.1 |
Pfam | PF13193 |
AMP-binding_C | Domain | 525 | 603 | 2.5e-11 | 45.0 | AMP-binding enzyme C-terminal domain |
XP_057800338.1 |
Pfam | PF13360 |
PQQ_2 | Repeat | 817 | 911 | 1.3e-15 | 58.4 | Outer membrane protein assembly factor BamB |
XP_057800338.1 |
Pfam | PF13570 |
Beta-prop_ACSF4 | Repeat | 822 | 1164 | 1.2e-103 | 347.7 | Beta-alanine-activating enzyme, beta-propeller |
XP_057800338.1 |
Pfam | PF13360 |
PQQ_2 | Repeat | 963 | 1164 | 1.3e-15 | 58.4 | Outer membrane protein assembly factor BamB |
XP_057800339.1 |
Pfam | PF00501 |
AMP-binding | Family | 139 | 462 | 1.3e-46 | 159.8 | AMP-binding enzyme |
XP_057800339.1 |
Pfam | PF13193 |
AMP-binding_C | Domain | 525 | 603 | 1.7e-11 | 45.6 | AMP-binding enzyme C-terminal domain |
XP_057800339.1 |
Pfam | PF13360 |
PQQ_2 | Repeat | 817 | 911 | 2.3e-06 | 28.2 | Outer membrane protein assembly factor BamB |
XP_057800339.1 |
Pfam | PF13570 |
Beta-prop_ACSF4 | Repeat | 822 | 969 | 2.3e-51 | 175.8 | Beta-alanine-activating enzyme, beta-propeller |
XP_057800340.1 |
Pfam | PF00501 |
AMP-binding | Family | 139 | 462 | 1.2e-46 | 160.0 | AMP-binding enzyme |
XP_057800340.1 |
Pfam | PF13193 |
AMP-binding_C | Domain | 525 | 603 | 1.6e-11 | 45.7 | AMP-binding enzyme C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
7 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。