当前解析结果
SmilChr03G002711| 统一新 Gene ID | SmilChr03G002711 |
|---|---|
| 名称 | SmilChr03G002711 |
| 描述 | protein transport protein SEC23 C-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 43064243 - 43081667 / + |
| NCBI Gene ID | LOC131015885 |
|---|---|
| GeneID | 131015885 |
| locus_tag | - |
| NCBI Name | LOC131015885 |
| 原始查询 | SmilChr03G002711 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein transport protein SEC23 C-like |
| 产物 | protein transport protein SEC23 C-like |
| Arabidopsis | AT2G21630 (AT2G21630)Sec23/Sec24 protein transport family protein [Source:NCBI gene (formerly Entrezgene);Acc:816701] identity=67.4; qcov=1; evalue=0; confidence=high |
| Rice | Os08g0474700- identity=75.5; qcov=1; evalue=0; confidence=high |
| GO | GO:0005096 (GTPase activator activity); GO:0006886 (intracellular protein transport); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0008270 (zinc ion binding); GO:0030127 (COPII vesicle coat); GO:0070971 (endoplasmic reticulum exit site); GO:0090110 (COPII-coated vesicle cargo loading); GO:0090114 (COPII-coated vesicle budding) |
| KEGG | smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00626 (Gelsolin); PF04810 (zf-Sec23_Sec24); PF04811 (Sec23_trunk); PF04815 (Sec23_helical); PF08033 (Sec23_BS) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015885 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057800341.1 |
| 2 | Cytoplasmic vesicle | 细胞质囊泡 | 0.60000 | XP_057800341.1 |
| 3 | Vesicle | 囊泡 | 0.60000 | XP_057800341.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057800341.1 |
| 5 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057800341.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:43064785 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B38,B39,B91,D7 |
Chr3:43064836 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B76,C2,C55 |
Chr3:43064893 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:43064894 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr3:43065454 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A2,B113,B67,B97,C46 |
Chr3:43065508 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B121,C26 |
Chr3:43065512 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B73,C28,C38,C78 |
Chr3:43065568 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr3:43066115 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B137,C19 |
Chr3:43066522 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:43067758 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A14,B50,B69 |
Chr3:43067799 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B121,C26 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800341.1PF04810
zf-Sec23_Sec24 56-95 aa
PF04811
Sec23_trunk 133-395 aa
PF08033
Sec23_BS 409-514 aa
PF04815
Sec23_helical 528-626 aa
PF00626
Gelsolin 641-728 aa
XP_057800342.1PF04810
zf-Sec23_Sec24 56-95 aa
PF04811
Sec23_trunk 133-395 aa
PF08033
Sec23_BS 409-514 aa
PF04815
Sec23_helical 528-626 aa
PF00626
Gelsolin 641-728 aa
XP_057800343.1PF04810
zf-Sec23_Sec24 56-95 aa
PF04811
Sec23_trunk 133-395 aa
PF08033
Sec23_BS 409-514 aa
PF04815
Sec23_helical 528-626 aa
PF00626
Gelsolin 641-728 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800341.1 |
Pfam | PF04810 |
zf-Sec23_Sec24 | Domain | 56 | 95 | 8e-14 | 52.1 | Sec23/Sec24 zinc finger |
XP_057800341.1 |
Pfam | PF04811 |
Sec23_trunk | Domain | 133 | 395 | 1.1e-63 | 215.8 | Sec23/Sec24 trunk domain |
XP_057800341.1 |
Pfam | PF08033 |
Sec23_BS | Domain | 409 | 514 | 1.8e-23 | 83.6 | Sec23/Sec24 beta-sandwich domain |
XP_057800341.1 |
Pfam | PF04815 |
Sec23_helical | Domain | 528 | 626 | 4.1e-26 | 91.5 | Sec23/Sec24 helical domain |
XP_057800341.1 |
Pfam | PF00626 |
Gelsolin | Domain | 641 | 728 | 1.4e-13 | 51.2 | Gelsolin repeat |
XP_057800342.1 |
Pfam | PF04810 |
zf-Sec23_Sec24 | Domain | 56 | 95 | 8e-14 | 52.1 | Sec23/Sec24 zinc finger |
XP_057800342.1 |
Pfam | PF04811 |
Sec23_trunk | Domain | 133 | 395 | 1.1e-63 | 215.8 | Sec23/Sec24 trunk domain |
XP_057800342.1 |
Pfam | PF08033 |
Sec23_BS | Domain | 409 | 514 | 1.8e-23 | 83.6 | Sec23/Sec24 beta-sandwich domain |
XP_057800342.1 |
Pfam | PF04815 |
Sec23_helical | Domain | 528 | 626 | 4.1e-26 | 91.5 | Sec23/Sec24 helical domain |
XP_057800342.1 |
Pfam | PF00626 |
Gelsolin | Domain | 641 | 728 | 1.4e-13 | 51.2 | Gelsolin repeat |
XP_057800343.1 |
Pfam | PF04810 |
zf-Sec23_Sec24 | Domain | 56 | 95 | 8e-14 | 52.1 | Sec23/Sec24 zinc finger |
XP_057800343.1 |
Pfam | PF04811 |
Sec23_trunk | Domain | 133 | 395 | 1.1e-63 | 215.8 | Sec23/Sec24 trunk domain |
XP_057800343.1 |
Pfam | PF08033 |
Sec23_BS | Domain | 409 | 514 | 1.8e-23 | 83.6 | Sec23/Sec24 beta-sandwich domain |
XP_057800343.1 |
Pfam | PF04815 |
Sec23_helical | Domain | 528 | 626 | 4.1e-26 | 91.5 | Sec23/Sec24 helical domain |
XP_057800343.1 |
Pfam | PF00626 |
Gelsolin | Domain | 641 | 728 | 1.4e-13 | 51.2 | Gelsolin repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。