Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002714`

染色体: Chr03 坐标: 43097783-43099763 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002714`
名称	SmilChr03G002714
描述	uncharacterized SmilChr03G002714
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	43097783 - 43099763 / `-`

ID 对照

NCBI Gene ID	`LOC131015891`
GeneID	`131015891`
locus_tag	`-`
NCBI Name	`LOC131015891`
原始查询	`SmilChr03G002714`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819048]; symbol=AT2G44410; hit=AT2G44410; species=arabidopsis; confidence=medium
产物	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819048]; symbol=AT2G44410; hit=AT2G44410; species=arabidopsis; confidence=medium
Arabidopsis	`AT2G44410` (AT2G44410) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819048] identity=42.3; qcov=0.587; evalue=7.15e-54; confidence=medium
Rice	`Os05g0470700` (OsRFP) - identity=49.6; qcov=0.276; evalue=1.7e-31; confidence=weak
GO	GO:0005783 (endoplasmic reticulum); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0044390 (ubiquitin-like protein conjugating enzyme binding); GO:0061630 (ubiquitin protein ligase activity); GO:0071712 (GO:0071712)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF13445 (zf-RING_UBOX); PF13920 (zf-C3HC4_3); PF14447 (Prok-RING_4); PF14634 (zf-RING_5)
InterPro	-
eggNOG	-
NR	GeneID:131015891

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057800358.1`
2	Chromosome	染色体	0.00000	`XP_057800358.1`
3	Centromere	着丝粒	0.00000	`XP_057800358.1`
4	Chromatin	染色质	0.00000	`XP_057800358.1`
5	Telomere	端粒	0.00000	`XP_057800358.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:43098076`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C55
`Chr3:43098098`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B137,B34,C19,C77,C82
`Chr3:43098214`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B115,B117,B99,C3
`Chr3:43098312`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B6,C34,C4,C58
`Chr3:43098590`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr3:43098647`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B105,B78,C47
`Chr3:43098666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B103,B46,B93,B95
`Chr3:43098743`	`A`	`AG`	1bp_insertion	frameshift_variant	118	A18,A2,A21,A22,A24,A4,A9,B10,B100,B102,B103,B105,B107,B108,B109,B11,B112,B113,B114,B115,B118,B119,B121,B127,B129,B13,B130,B131,B132,B133,B134,B138,B14,B140,B17,B18,B2,B20,B21,B22,B25,B26,B28,B3,B30,B31,B32,B35,B37,B38,B39,B40,B41,B42,B44,B45,B5,B51,B54,B55,B56,B58,B60,B62,B64,B65,B66,B67,B69,B7,B70,B72,B73,B77,B81,B83,B85,B86,B87,B88,B9,B91,B92,B94,B97,C10,C13,C16,C21,C22,C24,C27,C32,C35,C36,C39,C44,C48,C54,C55,C58,C59,C6,C60,C61,C65,C66,C67,C68,C72,C76,C78,C83,C85,C87,C9,D10,D5
`Chr3:43098744`	`C`	`CGT`	2bp_insertion	frameshift_variant	118	A18,A2,A21,A22,A24,A4,A9,B10,B100,B102,B103,B105,B107,B108,B109,B11,B112,B113,B114,B115,B118,B119,B121,B127,B129,B13,B130,B131,B132,B133,B134,B138,B14,B140,B17,B18,B2,B20,B21,B22,B25,B26,B28,B3,B30,B31,B32,B35,B37,B38,B39,B40,B41,B42,B44,B45,B5,B51,B54,B55,B56,B58,B60,B62,B64,B65,B66,B67,B69,B7,B70,B72,B73,B77,B81,B83,B85,B86,B87,B88,B9,B91,B92,B94,B97,C10,C13,C16,C21,C22,C24,C27,C32,C35,C36,C39,C44,C48,C54,C55,C58,C59,C6,C60,C61,C65,C66,C67,C68,C72,C76,C78,C83,C85,C87,C9,D10,D5
`Chr3:43098838`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr3:43098880`	`T`	`TG`	1bp_insertion	frameshift_variant	29	A10,A20,B108,B126,B132,B136,B19,B22,B23,B4,B50,B80,B91,B93,C1,C11,C15,C18,C20,C25,C32,C34,C40,C44,C49,C50,C51,C73,C81
`Chr3:43098888`	`C`	`CAA`	2bp_insertion	frameshift_variant	2	A4,B40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800358.1

431 aa

216

431

zf-RING_5

zf-C3HC4_3

zf-RING_UBOX

zf-C3HC4

Prok-RING_4

PF14634 zf-RING_5 140-182 aa PF13920 zf-C3HC4_3 140-186 aa PF13445 zf-RING_UBOX 141-179 aa PF00097 zf-C3HC4 141-181 aa PF14447 Prok-RING_4 141-189 aa

XP_057800359.1

431 aa

216

431

zf-RING_5

zf-C3HC4_3

zf-RING_UBOX

zf-C3HC4

Prok-RING_4

PF14634 zf-RING_5 140-182 aa PF13920 zf-C3HC4_3 140-186 aa PF13445 zf-RING_UBOX 141-179 aa PF00097 zf-C3HC4 141-181 aa PF14447 Prok-RING_4 141-189 aa

XP_057800360.1

431 aa

216

431

zf-RING_5

zf-C3HC4_3

zf-RING_UBOX

zf-C3HC4

Prok-RING_4

PF14634 zf-RING_5 140-182 aa PF13920 zf-C3HC4_3 140-186 aa PF13445 zf-RING_UBOX 141-179 aa PF00097 zf-C3HC4 141-181 aa PF14447 Prok-RING_4 141-189 aa

XP_057800362.1

431 aa

216

431

zf-RING_5

zf-C3HC4_3

zf-RING_UBOX

zf-C3HC4

Prok-RING_4

PF14634 zf-RING_5 140-182 aa PF13920 zf-C3HC4_3 140-186 aa PF13445 zf-RING_UBOX 141-179 aa PF00097 zf-C3HC4 141-181 aa PF14447 Prok-RING_4 141-189 aa

XP_057800363.1

431 aa

216

431

zf-RING_5

zf-C3HC4_3

zf-RING_UBOX

zf-C3HC4

Prok-RING_4

PF14634 zf-RING_5 140-182 aa PF13920 zf-C3HC4_3 140-186 aa PF13445 zf-RING_UBOX 141-179 aa PF00097 zf-C3HC4 141-181 aa PF14447 Prok-RING_4 141-189 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800358.1`	Pfam	`PF14634`	zf-RING_5	Domain	140	182	3.6e-08	34.0	zinc-RING finger domain
`XP_057800358.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	140	186	1.4e-07	31.9	Zinc finger, C3HC4 type (RING finger)
`XP_057800358.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	141	179	1.5e-08	35.2	RING-type zinc-finger
`XP_057800358.1`	Pfam	`PF00097`	zf-C3HC4	Domain	141	181	7.5e-07	29.6	Zinc finger, C3HC4 type (RING finger)
`XP_057800358.1`	Pfam	`PF14447`	Prok-RING_4	Family	141	189	1.7e-06	28.5	Prokaryotic RING finger family 4
`XP_057800359.1`	Pfam	`PF14634`	zf-RING_5	Domain	140	182	3.6e-08	34.0	zinc-RING finger domain
`XP_057800359.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	140	186	1.4e-07	31.9	Zinc finger, C3HC4 type (RING finger)
`XP_057800359.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	141	179	1.5e-08	35.2	RING-type zinc-finger
`XP_057800359.1`	Pfam	`PF00097`	zf-C3HC4	Domain	141	181	7.5e-07	29.6	Zinc finger, C3HC4 type (RING finger)
`XP_057800359.1`	Pfam	`PF14447`	Prok-RING_4	Family	141	189	1.7e-06	28.5	Prokaryotic RING finger family 4
`XP_057800360.1`	Pfam	`PF14634`	zf-RING_5	Domain	140	182	3.6e-08	34.0	zinc-RING finger domain
`XP_057800360.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	140	186	1.4e-07	31.9	Zinc finger, C3HC4 type (RING finger)
`XP_057800360.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	141	179	1.5e-08	35.2	RING-type zinc-finger
`XP_057800360.1`	Pfam	`PF00097`	zf-C3HC4	Domain	141	181	7.5e-07	29.6	Zinc finger, C3HC4 type (RING finger)
`XP_057800360.1`	Pfam	`PF14447`	Prok-RING_4	Family	141	189	1.7e-06	28.5	Prokaryotic RING finger family 4
`XP_057800362.1`	Pfam	`PF14634`	zf-RING_5	Domain	140	182	3.6e-08	34.0	zinc-RING finger domain
`XP_057800362.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	140	186	1.4e-07	31.9	Zinc finger, C3HC4 type (RING finger)
`XP_057800362.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	141	179	1.5e-08	35.2	RING-type zinc-finger
`XP_057800362.1`	Pfam	`PF00097`	zf-C3HC4	Domain	141	181	7.5e-07	29.6	Zinc finger, C3HC4 type (RING finger)
`XP_057800362.1`	Pfam	`PF14447`	Prok-RING_4	Family	141	189	1.7e-06	28.5	Prokaryotic RING finger family 4
`XP_057800363.1`	Pfam	`PF14634`	zf-RING_5	Domain	140	182	3.6e-08	34.0	zinc-RING finger domain
`XP_057800363.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	140	186	1.4e-07	31.9	Zinc finger, C3HC4 type (RING finger)
`XP_057800363.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	141	179	1.5e-08	35.2	RING-type zinc-finger
`XP_057800363.1`	Pfam	`PF00097`	zf-C3HC4	Domain	141	181	7.5e-07	29.6	Zinc finger, C3HC4 type (RING finger)
`XP_057800363.1`	Pfam	`PF14447`	Prok-RING_4	Family	141	189	1.7e-06	28.5	Prokaryotic RING finger family 4

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057944380.1
TGAGTCGTAGCAGATGCTACCCTTTCTCTCTCTACCCTTTCTCGCTCCCACTCTTTTTCTCTCCCAAGAATTATCCAAGATGCCCAGCCTGTATTCTTCGCTTTCTCTCTCCATATACACACAACTCATGATAATCAATTAGGATTTCCATGCTTCAAATCAGCACTACCATGGAGAATCACTATCTGAGACGAAAATTCCATCCTCTCTATGCAGGATTTTGAGATTTCGTAGTTTTATGCGTGTACTCTAATCATGGA...

XM_057944379.1
TGAGTCGTAGCAGATGCTACCCTTTCTCTCTCTACCCTTTCTCGCTCCCACTCTTTTTCTCTCCCAAGAATTATCCAAGATGCCCAGCCTGTATTCTTCGCTTTCTCTCTCCATATACACACAACTCATGATAATCAATTAGGATTTCCATGCTTCAAATCAGCACTACCATGGAGAATCACTATCTGAGACGAAAATTCCATCCTCTCTATGCAGGGTTGTATGTCCGGTAAACTGCGGTCTTCTTTCAGGATTTTGAG...

CDS

5 records

下载 CDS FASTA

LOC131015891
ATGGACGAGAACTATTTGATGGATGTGGATTTTTCGGATCTTGATTTGAACCAAGAACCTTCAAACCCACCTCTGCATAGGGTTGAAAGATATGGGTCGTTGTTGAATGAATTAGAAACTGCTCATGATAGGATAGAGGAGAGGATCCGACAGCTAGAGGTGGTTACTGCTCGCACGAGGCAGCGCCAGCGGTGGCGACAGGCCAGAAATTCTATGGAAATTAGTTATTTTCCTAGTGAAACAGCCGTAGATGCGGGTCT...

Protein

5 records

下载 Protein FASTA

XP_057800358.1
MDENYLMDVDFSDLDLNQEPSNPPLHRVERYGSLLNELETAHDRIEERIRQLEVVTARTRQRQRWRQARNSMEISYFPSETAVDAGLRGSPNENNNTSVFKSSSERGKGCKRDSSHLVAKALEMGSEVKKADKEGGSFYDCNICLEVAREPVLTCCGHLFCWSCFYQVSDVDSTSKECPVCKGEVSDGNVIPIYGNGESERVRETESGLKIPPRPKAHRVESVRQQRVTQGLSHVPVAEALRRIRISIGAVGNQTQQEVG...

XP_057800359.1
MDENYLMDVDFSDLDLNQEPSNPPLHRVERYGSLLNELETAHDRIEERIRQLEVVTARTRQRQRWRQARNSMEISYFPSETAVDAGLRGSPNENNNTSVFKSSSERGKGCKRDSSHLVAKALEMGSEVKKADKEGGSFYDCNICLEVAREPVLTCCGHLFCWSCFYQVSDVDSTSKECPVCKGEVSDGNVIPIYGNGESERVRETESGLKIPPRPKAHRVESVRQQRVTQGLSHVPVAEALRRIRISIGAVGNQTQQEVG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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