Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002726`

染色体: Chr03 坐标: 43313021-43320338 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002726`
名称	SmilChr03G002726
描述	pectin acetylesterase 11-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	43313021 - 43320338 / `+`

ID 对照

NCBI Gene ID	`LOC131015890`
GeneID	`131015890`
locus_tag	`-`
NCBI Name	`LOC131015890`
原始查询	`SmilChr03G002726`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pectin acetylesterase 11-like
产物	pectin acetylesterase 11-like
Arabidopsis	`AT5G45280` (AT5G45280) Pectinacetylesterase family protein [Source:NCBI gene (formerly Entrezgene);Acc:834564] identity=49.6; qcov=0.835; evalue=5.1e-93; confidence=high
Rice	`Os02g0702400` - identity=47.5; qcov=0.926; evalue=4.18e-93; confidence=high
GO	GO:0009505 (plant-type cell wall); GO:0052793 (pectin acetylesterase activity); GO:0071555 (cell wall organization)
KEGG	-
Pfam	PF03283 (PAE)
InterPro	-
eggNOG	-
NR	GeneID:131015890

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057800353.1`
2	Vacuole	液泡	0.60000	`XP_057800356.1`
3	Cell wall	细胞壁	0.20000	`XP_057800351.1`
4	Nucleus	细胞核	0.00000	`XP_057800354.1`
5	Chromosome	染色体	0.00000	`XP_057800354.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:43313095`	`CA`	`C`	1bp_deletion	frameshift_variant	3	B98,C31,C82
`Chr3:43313095`	`CA`	`C`	1bp_deletion	CDS_variant	3	B98,C31,C82
`Chr3:43313098`	`CT`	`C`	1bp_deletion	frameshift_variant	3	B98,C31,C82
`Chr3:43313098`	`CT`	`C`	1bp_deletion	CDS_variant	3	B98,C31,C82
`Chr3:43313101`	`C`	`CA`	1bp_insertion	frameshift_variant	3	A4,B135,B57
`Chr3:43313101`	`C`	`CA`	1bp_insertion	CDS_variant	3	A4,B135,B57
`Chr3:43313105`	`C`	`CT`	1bp_insertion	frameshift_variant	2	B120,B74
`Chr3:43313105`	`C`	`CT`	1bp_insertion	CDS_variant	2	B120,B74
`Chr3:43313118`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,A2,B24,C48,C71
`Chr3:43313126`	`G`	`GA`	1bp_insertion	frameshift_variant	20	A19,A4,A6,A9,B101,B114,B125,B135,B16,B21,B57,B76,B79,B8,B81,C28,C36,C73,C74,D8
`Chr3:43313269`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A20,B91,D7
`Chr3:43318417`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,C80,D10,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800351.1

398 aa

199

398

PAE

PF03283 PAE 26-387 aa

XP_057800352.1

395 aa

198

395

PAE

PF03283 PAE 26-384 aa

XP_057800353.1

394 aa

197

394

PAE

PF03283 PAE 26-383 aa

XP_057800354.1

372 aa

186

372

PAE

PF03283 PAE 26-250 aa PF03283 PAE 263-361 aa

XP_057800355.1

369 aa

184

369

PAE

PF03283 PAE 26-247 aa PF03283 PAE 260-358 aa

XP_057800356.1

368 aa

184

368

PAE

PF03283 PAE 26-246 aa PF03283 PAE 260-357 aa

XP_057800357.1

309 aa

154

309

PAE

PF03283 PAE 26-279 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800351.1`	Pfam	`PF03283`	PAE	Family	26	387	1.7e-117	393.3	Pectinacetylesterase
`XP_057800352.1`	Pfam	`PF03283`	PAE	Family	26	384	2.4e-115	386.3	Pectinacetylesterase
`XP_057800353.1`	Pfam	`PF03283`	PAE	Family	26	383	3.3e-113	379.2	Pectinacetylesterase
`XP_057800354.1`	Pfam	`PF03283`	PAE	Family	26	250	2.6e-98	330.2	Pectinacetylesterase
`XP_057800354.1`	Pfam	`PF03283`	PAE	Family	263	361	2.6e-98	330.2	Pectinacetylesterase
`XP_057800355.1`	Pfam	`PF03283`	PAE	Family	26	247	6e-96	322.4	Pectinacetylesterase
`XP_057800355.1`	Pfam	`PF03283`	PAE	Family	260	358	6e-96	322.4	Pectinacetylesterase
`XP_057800356.1`	Pfam	`PF03283`	PAE	Family	26	246	5.4e-94	316.0	Pectinacetylesterase
`XP_057800356.1`	Pfam	`PF03283`	PAE	Family	260	357	5.4e-94	316.0	Pectinacetylesterase
`XP_057800357.1`	Pfam	`PF03283`	PAE	Family	26	279	6e-101	338.9	Pectinacetylesterase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057944368.1
TTCTGTGGTTCACATCACATCCAATTCCAAACACTAGTCATGGCTCAATTTGTGTTGCTCATCATCTTCATCTTCATCTTCTCACTGCAAAGCTGTGGTGTGGACGGCGCTCGCAACATTTCTATAACTCTGTTGAAGAATGCTCTTGCCAAAGGAGCAGTTTGCCTTGACGGCAGCCCTCCCGCTTATGCCTACAGTCGAGGATTTGGAGATGGAGCAGACAACTGGCATGTCTATTTACAGGGTGGTGGGTGGTGTGA...

XM_057944374.1
TTCTGTGGTTCACATCACATCCAATTCCAAACACTAGTCATGGCTCAATTTGTGTTGCTCATCATCTTCATCTTCATCTTCTCACTGCAAAGCTGTGGTGTGGACGGCGCTCGCAACATTTCTATAACTCTGTTGAAGAATGCTCTTGCCAAAGGAGCAGTTTGCCTTGACGGCAGCCCTCCCGCTTATGCCTACAGTCGAGGATTTGGAGATGGAGCAGACAACTGGCATGTCTATTTACAGGGTGGTGGGTGGTGTGA...

CDS

7 records

下载 CDS FASTA

LOC131015890
ATGGCTCAATTTGTGTTGCTCATCATCTTCATCTTCATCTTCTCACTGCAAAGCTGTGGTGTGGACGGCGCTCGCAACATTTCTATAACTCTGTTGAAGAATGCTCTTGCCAAAGGAGCAGTTTGCCTTGACGGCAGCCCTCCCGCTTATGCCTACAGTCGAGGATTTGGAGATGGAGCAGACAACTGGCATGTCTATTTACAGGGTGGTGGGTGGTGTGACTCAAGAGGTTCTTGCTTGGATAGATCCAAAAATGAATA...

Protein

7 records

下载 Protein FASTA

XP_057800351.1
MAQFVLLIIFIFIFSLQSCGVDGARNISITLLKNALAKGAVCLDGSPPAYAYSRGFGDGADNWHVYLQGGGWCDSRGSCLDRSKNEYGSSTVIMATKNGTITFRGMLADNSTFNPDFYNWNVVYIFYCDGSSFMSDIEEVDPVHNLTYRGGRIYEAMMDELLRMGMGNAKNALLSGTSAGGLATILHCDKFQALFPDSTRVKCLSDSGFFIRGQYFTGADLREGRFYGVVKTNKLENLLPTSCTTKFNPILCFFPENLVK...

XP_057800352.1
MAQFVLLIIFIFIFSLQSCGVDGARNISITLLKNALAKGAVCLDGSPPAYAYSRGFGDGADNWHVYLQGGGWCDSRGSCLDRSKNEYGSSTVIMATKNGTITFRGMLADNSTFNPDFYNWNVVYIFYCDGSSFMSDIEEVHNLTYRGGRIYEAMMDELLRMGMGNAKNALLSGTSAGGLATILHCDKFQALFPDSTRVKCLSDSGFFIRGQYFTGADLREGRFYGVVKTNKLENLLPTSCTTKFNPILCFFPENLVKDVQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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