Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002737`

染色体: Chr03 坐标: 43500931-43503338 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002737`
名称	SmilChr03G002737
描述	beta-hexosaminidase 2-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	43500931 - 43503338 / `+`

ID 对照

NCBI Gene ID	`LOC131015915`
GeneID	`131015915`
locus_tag	`-`
NCBI Name	`LOC131015915`
原始查询	`SmilChr03G002737`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	beta-hexosaminidase 2-like
产物	beta-hexosaminidase 2-like
Arabidopsis	`AT1G05590` (HEXO2) beta-hexosaminidase 2 [Source:NCBI gene (formerly Entrezgene);Acc:837064] identity=63.8; qcov=1; evalue=0; confidence=high
Rice	`Os07g0575500` - identity=59.2; qcov=0.977; evalue=0; confidence=high
GO	GO:0004563 (beta-N-acetylhexosaminidase activity); GO:0005975 (carbohydrate metabolic process); GO:0016020 (membrane); GO:0030203 (glycosaminoglycan metabolic process)
KEGG	smil00511 (Other glycan degradation - Salvia miltiorrhiza (redroot sage)); smil00513 (Various types of N-glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil00531 (Glycosaminoglycan degradation - Salvia miltiorrhiza (redroot sage)); smil00600 (Sphingolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00603 (Glycosphingolipid biosynthesis - globo and isoglobo series - Salvia miltiorrhiza (redroot sage)); smil00604 (Glycosphingolipid biosynthesis - ganglio series - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00728 (Glyco_hydro_20); PF14845 (Glycohydro_20b2)
InterPro	-
eggNOG	-
NR	GeneID:131015915

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	0.60000	`XP_057800388.1`
2	Vacuole	液泡	0.40000	`XP_057800388.1`
3	Nucleus	细胞核	0.00000	`XP_057800388.1`
4	Chromosome	染色体	0.00000	`XP_057800388.1`
5	Centromere	着丝粒	0.00000	`XP_057800388.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:43501210`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,B56,B82,B96,C65
`Chr3:43501221`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr3:43501224`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B2,B83,C40,C59
`Chr3:43501242`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C78
`Chr3:43501398`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B69,C1,D10
`Chr3:43501460`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B69,C1,D10
`Chr3:43501497`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr3:43501533`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B69,B78,C1,D10
`Chr3:43501647`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr3:43501659`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr3:43501734`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:43501763`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800388.1

577 aa

288

577

Glycohydro_20b2

Glyco_hydro_20

PF14845 Glycohydro_20b2 32-148 aa PF00728 Glyco_hydro_20 168-525 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800388.1`	Pfam	`PF14845`	Glycohydro_20b2	Domain	32	148	2.8e-21	77.3	beta-acetyl hexosaminidase like
`XP_057800388.1`	Pfam	`PF00728`	Glyco_hydro_20	Domain	168	525	2.7e-102	343.4	Glycosyl hydrolase family 20, catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057944405.1
ACTAGCTGTAATTCTCCTCTACCAATATAAAGAAAAATATCTTTAATATCGTCAGTGTAGACCAGTATCTTTTGTCTATGGATACCATACAACTTTCCTATAAAAATTGTTGAAAGGTCATAAATAACTAAACGGCAAAATACATGAAAAATGACTTGTATTCCCCACATTTTCATCATATTCATATCCACTACATTATGGTCCACTGCTCCTCAATCCTCAGCCCTTCAATTTCCAATCAACGTCTGGCCGAAGCCGAC...

CDS

1 records

下载 CDS FASTA

LOC131015915
ATGACTTGTATTCCCCACATTTTCATCATATTCATATCCACTACATTATGGTCCACTGCTCCTCAATCCTCAGCCCTTCAATTTCCAATCAACGTCTGGCCGAAGCCGACCTCCATCAAGTGGCCCCACCCACAAGCAATCCGCCTCTCCCCCAAATTCACCATCTCCAGCCCCCGCCACCGTTACCTCATCCGCGCCGCCCGCCGCTACCGCCGCCTCGTCCTCTCCGAGCACCACCGCCCCCTCGTCCCGCCACTCCT...

Protein

1 records

下载 Protein FASTA

XP_057800388.1
MTCIPHIFIIFISTTLWSTAPQSSALQFPINVWPKPTSIKWPHPQAIRLSPKFTISSPRHRYLIRAARRYRRLVLSEHHRPLVPPLLNLTSSPPLQTLAITVSDVAAPLSHGVDESYTLEIPSTGAAAELAAVTAWGAMRGMETFSQLVYSNPPAAACGLRISDAPLFAHRGVLLDTSRNYYKAADLVRLVRAMSMNKLNVFHWHITDSHSFPLVVPSEAELAERGAYGEEMKYTAADVKKIVEHGMEHGVRVVPEIDMP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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