Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002744`

染色体: Chr03 坐标: 43605235-43608348 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002744`
名称	SmilChr03G002744
描述	uncharacterized SmilChr03G002744
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	43605235 - 43608348 / `+`

ID 对照

NCBI Gene ID	`LOC131015920`
GeneID	`131015920`
locus_tag	`-`
NCBI Name	`LOC131015920`
原始查询	`SmilChr03G002744`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	tRNA (guanine-N-7) methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:831632]; symbol=AT5G17660; hit=AT5G17660; species=arabidopsis; confidence=high
产物	tRNA (guanine-N-7) methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:831632]; symbol=AT5G17660; hit=AT5G17660; species=arabidopsis; confidence=high
Arabidopsis	`AT5G17660` (AT5G17660) tRNA (guanine-N-7) methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:831632] identity=69.2; qcov=0.775; evalue=8.37e-78; confidence=high
Rice	`Os01g0535900` - identity=65.1; qcov=0.697; evalue=6.9e-65; confidence=high
GO	GO:0008176 (tRNA (guanine(46)-N7)-methyltransferase activity); GO:0030488 (tRNA methylation); GO:0036265 (RNA (guanine-N7)-methylation); GO:0043527 (tRNA methyltransferase complex)
KEGG	-
Pfam	PF02390 (Methyltransf_4)
InterPro	-
eggNOG	-
NR	GeneID:131015920

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057800406.1`
2	Chloroplast stroma	叶绿体基质	0.20000	`XP_057800408.1`
3	Nucleus	细胞核	0.00000	`XP_057800406.1`
4	Chromosome	染色体	0.00000	`XP_057800406.1`
5	Centromere	着丝粒	0.00000	`XP_057800406.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:43605525`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B66,C26,C65
`Chr3:43606363`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B29
`Chr3:43606363`	`AT`	`A`	1bp_deletion	CDS_variant	1	B29
`Chr3:43606386`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr3:43606926`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A11,B69
`Chr3:43607650`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B73,C28,C38

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800406.1

302 aa

151

302

Methyltransf_4

PF02390 Methyltransf_4 103-242 aa

XP_057800407.1

294 aa

147

294

Methyltransf_4

PF02390 Methyltransf_4 103-242 aa

XP_057800408.1

218 aa

109

218

Methyltransf_4

PF02390 Methyltransf_4 103-215 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800406.1`	Pfam	`PF02390`	Methyltransf_4	Family	103	242	8.6e-32	110.7	Putative methyltransferase
`XP_057800407.1`	Pfam	`PF02390`	Methyltransf_4	Family	103	242	8e-32	110.8	Putative methyltransferase
`XP_057800408.1`	Pfam	`PF02390`	Methyltransf_4	Family	103	215	4.6e-25	88.8	Putative methyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057944424.1
ATTGTGACCGGAACATCGCACATGAGGCTGAGGCATACTAGTTCTACTTAAAACTTTGGGTGCTTGTGTTGCAGCTCCGGAGACATTGTTAGTGTTCATAGACAACTCCGAGCTCCGATGTGGTGCGCCGTACCCAGATTTATCCGCCCCATCACCGCCATATCACCTCCGCCGAATTCATCATTTCCTACTTTATGCCACCGTGGAGTTTCAACGGCGGTGTATCCTGCTATATCCTCACCGGAAAAACTAGAACATAG...

XM_057944423.1
ATTGTGACCGGAACATCGCACATGAGGCTGAGGCATACTAGTTCTACTTAAAACTTTGGGTGCTTGTGTTGCAGCTCCGGAGACATTGTTAGTGTTCATAGACAACTCCGAGCTCCGATGTGGTGCGCCGTACCCAGATTTATCCGCCCCATCACCGCCATATCACCTCCGCCGAATTCATCATTTCCTACTTTATGCCACCGTGGAGTTTCAACGGCGGTGTATCCTGCTATATCCTCACCGGAAAAACTAGAACATAG...

CDS

3 records

下载 CDS FASTA

LOC131015920
ATGTGGTGCGCCGTACCCAGATTTATCCGCCCCATCACCGCCATATCACCTCCGCCGAATTCATCATTTCCTACTTTATGCCACCGTGGAGTTTCAACGGCGGTGTATCCTGCTATATCCTCACCGGAAAAACTAGAACATAGCAACGAACTCGTCGCACGGGAATACGCTGACCTCAATCTTTCCAGCAATTGCCAGGAGGTTGGCCATGTTAGAATCCGGCAGCATGTTAATCCTCTCAGTTCTTCAAAAATGGTTCC...

Protein

3 records

下载 Protein FASTA

XP_057800406.1
MWCAVPRFIRPITAISPPPNSSFPTLCHRGVSTAVYPAISSPEKLEHSNELVAREYADLNLSSNCQEVGHVRIRQHVNPLSSSKMVPRELPDWNGVYKDAKLPLMVDIGSGSGRFLLMLAKRNCGLRNYLGLEIRPKLAIRAESWVHELGLNNIHFIYANATVSFKQFVSTYPGPLVLVSILCPDPHFKKKHHKRRVVQKPLVDSIVEGLVPGGQIFIQSDVQEVAVDMRKYFDAESDKLVHINHVDPNMLCDNEGWLLS...

XP_057800407.1
MWCAVPRFIRPITAISPPPNSSFPTLCHRGVSTAVYPAISSPEKLEHSNELVAREYADLNLSSNCQEVGHVRIRQHVNPLSSSKMVPRELPDWNGVYKDAKLPLMVDIGSGSGRFLLMLAKRNCGLRNYLGLEIRPKLAIRAESWVHELGLNNIHFIYANATVSFKQFVSTYPGPLVLVSILCPDPHFKKKHHKRRVVQKPLVDSIVEGLVPGGQIFIQSDVQEVAVDMRKYFDAESDKLVHINHVDPNMLCDNEGWLLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器