当前解析结果
SmilChr03G002768| 统一新 Gene ID | SmilChr03G002768 |
|---|---|
| 名称 | SmilChr03G002768 |
| 描述 | F-box/kelch-repeat protein SKIP25-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 44035273 - 44036982 / - |
| NCBI Gene ID | LOC131015941 |
|---|---|
| GeneID | 131015941 |
| locus_tag | - |
| NCBI Name | LOC131015941 |
| 原始查询 | SmilChr03G002768 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/kelch-repeat protein SKIP25-like |
| 产物 | F-box/kelch-repeat protein SKIP25-like |
| Arabidopsis | AT1G31350 (KUF1)KAR-UP F-box 1 [Source:NCBI gene (formerly Entrezgene);Acc:840024] identity=45; qcov=0.869; evalue=3.02e-103; confidence=medium |
| Rice | Os06g0711700- identity=42; qcov=0.853; evalue=2.33e-86; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015941 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057800446.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057800446.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057800446.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057800446.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057800446.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:44035501 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B122 |
Chr3:44035501 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr3:44035553 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr3:44035744 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B69,C1,C4,D10 |
Chr3:44035746 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr3:44035760 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr3:44035844 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B114,B122,B19 |
Chr3:44035901 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B114,B122,B19 |
Chr3:44035920 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr3:44036042 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | B72 |
Chr3:44036042 |
T |
TG |
1bp_insertion | CDS_variant | 1 | B72 |
Chr3:44036078 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B19 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。