当前解析结果
SmilChr03G002776| 统一新 Gene ID | SmilChr03G002776 |
|---|---|
| 名称 | SmilChr03G002776 |
| 描述 | beta-glucosidase 12-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 44165206 - 44173668 / - |
| NCBI Gene ID | LOC131018853 |
|---|---|
| GeneID | 131018853 |
| locus_tag | - |
| NCBI Name | LOC131018853 |
| 原始查询 | SmilChr03G002776 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-glucosidase 12-like |
| 产物 | beta-glucosidase 12-like |
| Arabidopsis | AT2G44480 (BGLU17)beta glucosidase 17 [Source:NCBI gene (formerly Entrezgene);Acc:819055] identity=57.9; qcov=0.708; evalue=2.6e-140; confidence=high |
| Rice | Os06g0320200 (Os6bglu24)- identity=58.5; qcov=0.714; evalue=5e-154; confidence=high |
| GO | GO:0005975 (carbohydrate metabolic process); GO:0008422 (beta-glucosidase activity) |
| KEGG | smil00460 (Cyanoamino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00232 (Glyco_hydro_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018853 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057803535.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057803535.1 |
| 3 | Endoplasmic reticulum lumen | 内质网腔 | 0.20000 | XP_057803535.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057803535.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057803535.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:44165259 |
AT |
A |
1bp_deletion | frameshift_variant | 15 | B1,B29,B54,B57,B65,B73,B78,B86,C13,C20,C37,C48,C53,C61,C78 |
Chr3:44165267 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B22,C55 |
Chr3:44165269 |
C |
CT |
1bp_insertion | frameshift_variant | 7 | A3,B117,B47,B58,C21,C31,C50 |
Chr3:44165270 |
CT |
C |
1bp_deletion | frameshift_variant | 7 | B100,B29,B54,B78,B86,C20,C48 |
Chr3:44165279 |
TC |
T |
1bp_deletion | frameshift_variant | 11 | A4,B109,B112,B115,B126,B34,C19,C28,C3,C43,C79 |
Chr3:44165753 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B73,C13,C37,C61,C78 |
Chr3:44165884 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B114,B122,B19,B33 |
Chr3:44167309 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:44167325 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr3:44167391 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr3:44167588 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr3:44167721 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803535.1PF00232
Glyco_hydro_1 111-445 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803535.1 |
Pfam | PF00232 |
Glyco_hydro_1 | Domain | 111 | 445 | 1.3e-114 | 384.0 | Glycosyl hydrolase family 1 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。