Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002807`

染色体: Chr03 坐标: 44527081-44529696 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002807`
名称	SmilChr03G002807
描述	syntaxin-22-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	44527081 - 44529696 / `-`

ID 对照

NCBI Gene ID	`LOC131016004`
GeneID	`131016004`
locus_tag	`-`
NCBI Name	`LOC131016004`
原始查询	`SmilChr03G002807`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	syntaxin-22-like
产物	syntaxin-22-like
Arabidopsis	`AT5G46860` (VAM3) Syntaxin/t-SNARE family protein [Source:NCBI gene (formerly Entrezgene);Acc:834730] identity=49.2; qcov=0.996; evalue=1.28e-71; confidence=high
Rice	`Os01g0254900` - identity=49.8; qcov=0.918; evalue=1.76e-70; confidence=high
GO	GO:0000149 (SNARE binding); GO:0005484 (SNAP receptor activity); GO:0006886 (intracellular protein transport); GO:0006906 (vesicle fusion); GO:0012505 (endomembrane system); GO:0016020 (membrane); GO:0016192 (vesicle-mediated transport); GO:0031201 (SNARE complex); GO:0048278 (GO:0048278)
KEGG	-
Pfam	PF05739 (SNARE); PF14523 (Syntaxin_2); PF29732 (Syntaxin_R9BP)
InterPro	-
eggNOG	-
NR	GeneID:131016004

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057800532.1`
2	Trans-golgi network	Trans-golgi network	0.80000	`XP_057800532.1`
3	Vacuole	液泡	0.80000	`XP_057800532.1`
4	Vacuole membrane	液泡膜	0.80000	`XP_057800532.1`
5	Nucleus	细胞核	0.00000	`XP_057800532.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:44529099`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B103,B4,C12
`Chr3:44529111`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B103,B130,B4,C12

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800532.1

291 aa

146

291

Syntaxin_2

Syntaxin_R9BP

SNARE

PF14523 Syntaxin_2 20-145 aa PF29732 Syntaxin_R9BP 30-186 aa PF05739 SNARE 178-249 aa

XP_057800533.1

289 aa

144

289

Syntaxin_2

Syntaxin_R9BP

SNARE

PF14523 Syntaxin_2 20-145 aa PF29732 Syntaxin_R9BP 30-199 aa PF05739 SNARE 176-247 aa

XP_057800534.1

269 aa

134

269

Syntaxin_2

Syntaxin_R9BP

SNARE

PF14523 Syntaxin_2 20-145 aa PF29732 Syntaxin_R9BP 30-186 aa PF05739 SNARE 178-254 aa

XP_057800536.1

267 aa

134

267

Syntaxin_2

Syntaxin_R9BP

SNARE

PF14523 Syntaxin_2 20-145 aa PF29732 Syntaxin_R9BP 30-199 aa PF05739 SNARE 176-252 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800532.1`	Pfam	`PF14523`	Syntaxin_2	Domain	20	145	5.9e-23	82.1	Syntaxin-like protein
`XP_057800532.1`	Pfam	`PF29732`	Syntaxin_R9BP	Domain	30	186	5.1e-07	30.2	R9BP syntaxin-like domain
`XP_057800532.1`	Pfam	`PF05739`	SNARE	Domain	178	249	3e-20	72.6	SNARE domain
`XP_057800533.1`	Pfam	`PF14523`	Syntaxin_2	Domain	20	145	3.8e-23	82.7	Syntaxin-like protein
`XP_057800533.1`	Pfam	`PF29732`	Syntaxin_R9BP	Domain	30	199	8.7e-07	29.5	R9BP syntaxin-like domain
`XP_057800533.1`	Pfam	`PF05739`	SNARE	Domain	176	247	2.9e-20	72.6	SNARE domain
`XP_057800534.1`	Pfam	`PF14523`	Syntaxin_2	Domain	20	145	3.8e-23	82.7	Syntaxin-like protein
`XP_057800534.1`	Pfam	`PF29732`	Syntaxin_R9BP	Domain	30	186	4.2e-07	30.5	R9BP syntaxin-like domain
`XP_057800534.1`	Pfam	`PF05739`	SNARE	Domain	178	254	4.5e-22	78.4	SNARE domain
`XP_057800536.1`	Pfam	`PF14523`	Syntaxin_2	Domain	20	145	2.6e-23	83.2	Syntaxin-like protein
`XP_057800536.1`	Pfam	`PF29732`	Syntaxin_R9BP	Domain	30	199	7.6e-07	29.7	R9BP syntaxin-like domain
`XP_057800536.1`	Pfam	`PF05739`	SNARE	Domain	176	252	4.3e-22	78.5	SNARE domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057944553.1
TCAGATGCTACACATACACAAATATATTGGCTGCTTCTAGTAGTTGGGAGTGACAAGTGCAAATCAAACGGGCAAACTGCAATTCATATTCATCAACTAAATAGAGTTAAAAAACATTCAAATCTGAAGTAAGAATAATTGGAGTATTGTGAGATAATCGAAAAGGTAAAAAGAGAGAGGGTATTAATTAATACTACAATAGTGGCATTTGATGATCACATTCATAGGCATTGGTTGGTAAGTAACGTGATTCAAAAAGA...

XM_057944550.1
TCAGATGCTACACATACACAAATATATTGGCTGCTTCTAGTAGTTGGGAGTGACAAGTGCAAATCAAACGGGCAAACTGCAATTCATATTCATCAACTAAATAGAGTTAAAAAACATTCAAATCTGAAGTAAGAATAATTGGAGTATTGTGAGATAATCGAAAAGGTAAAAAGAGAGAGGGTATTAATTAATACTACAATAGTGGCATTTGATGATCACATTCATAGGCATTGGTTGGTAAGTAACGTGATTCAAAAAGA...

CDS

4 records

下载 CDS FASTA

LOC131016004
ATGAGCTTCCAAGATGTCGGCAACAAGCCTACATCTGCCGCCAAAAATCAGTCGGAGTCGCAGGTCGTCGCCGCCGCCTTGTTCCAGACCAACACCGCCGTCGCCGCTTTCCGTCGACTCGTTGATGCCATCGGAACCTCCAAGGACACTCCCGATCACCGTCTCAAATTGCGAAGTACAAGGCAACGTATACTGGACTTGGTAAGGGACGCCTCTGCTAAGCTCAAGTCCCTCACTGAATCCGATCGCACCCACGACCA...

Protein

4 records

下载 Protein FASTA

XP_057800532.1
MSFQDVGNKPTSAAKNQSESQVVAAALFQTNTAVAAFRRLVDAIGTSKDTPDHRLKLRSTRQRILDLVRDASAKLKSLTESDRTHDHPNTKVQDAKLAKDLQTTLQEFQKVQQLAFERESKFSPALPPPSSITISTPADQHTESSFERENDDSFLMEQESSRQEIRLLDNDVAFNEAVIEEREQGIDEIQGQIREVNEMFKDLAVLVNEQGVTVDDIEHSIDNSAVSTTQAKVQLSKGSRSGNSKTSWVSGTYLYLVAMN...

XP_057800533.1
MSFQDVGNKPTSAAKNQSESQVVAAALFQTNTAVAAFRRLVDAIGTSKDTPDHRLKLRSTRQRILDLVRDASAKLKSLTESDRTHDHPNTKVQDAKLAKDLQTTLQEFQKVQQLAFERESKFSPALPPPSSITISTPADQHTESSFERENDDSFLMEQERQEIRLLDNDVAFNEAVIEEREQGIDEIQGQIREVNEMFKDLAVLVNEQGVTVDDIEHSIDNSAVSTTQAKVQLSKGSRSGNSKTSWVSGTYLYLVAMNTF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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