当前解析结果
SmilChr03G002808| 统一新 Gene ID | SmilChr03G002808 |
|---|---|
| 名称 | SmilChr03G002808 |
| 描述 | ATP-dependent DNA helicase At3g02060, chloroplastic |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 44529863 - 44536811 / - |
| NCBI Gene ID | LOC131015970 |
|---|---|
| GeneID | 131015970 |
| locus_tag | - |
| NCBI Name | LOC131015970 |
| 原始查询 | SmilChr03G002808 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ATP-dependent DNA helicase At3g02060, chloroplastic |
| 产物 | ATP-dependent DNA helicase At3g02060%2C chloroplastic |
| Arabidopsis | AT3G02060 (AT3G02060)DEAD/DEAH box helicase [Source:NCBI gene (formerly Entrezgene);Acc:821294] identity=80.1; qcov=0.925; evalue=0; confidence=high |
| Rice | Os02g0710800 (RecG)- identity=33.8; qcov=0.446; evalue=3.1e-53; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0005524 (ATP binding); GO:0006281 (DNA repair) |
| KEGG | - |
| Pfam | PF00270 (DEAD); PF00271 (Helicase_C); PF02559 (CarD_TRCF_RID); PF03461 (TRCF); PF04851 (ResIII) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015970 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057800471.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057800471.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057800471.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057800471.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057800471.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:44530366 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B108,B13,B59,C23 |
Chr3:44530887 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr3:44530890 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr3:44531918 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,B80 |
Chr3:44531968 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr3:44535610 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B103,C12 |
Chr3:44536439 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A10,A18,B133,B90,B92 |
Chr3:44536452 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr3:44536530 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,B80 |
Chr3:44536551 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B1,B69,C13,C77 |
Chr3:44536590 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,C38 |
Chr3:44536676 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800471.1PF02559
CarD_TRCF_RID 155-213 aa
PF04851
ResIII 283-443 aa
PF00270
DEAD 285-447 aa
PF00271
Helicase_C 489-591 aa
PF03461
TRCF 689-778 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800471.1 |
Pfam | PF02559 |
CarD_TRCF_RID | Domain | 155 | 213 | 1.4e-10 | 41.8 | CarD-like/TRCF RID domain |
XP_057800471.1 |
Pfam | PF04851 |
ResIII | Family | 283 | 443 | 5.5e-11 | 43.4 | Type III restriction enzyme, res subunit |
XP_057800471.1 |
Pfam | PF00270 |
DEAD | Domain | 285 | 447 | 1.1e-27 | 97.5 | DEAD/DEAH box helicase |
XP_057800471.1 |
Pfam | PF00271 |
Helicase_C | Domain | 489 | 591 | 5.4e-24 | 85.3 | Helicase conserved C-terminal domain |
XP_057800471.1 |
Pfam | PF03461 |
TRCF | Domain | 689 | 778 | 7.2e-06 | 27.0 | TRCF domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。