Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002812`

染色体: Chr03 坐标: 44587177-44590718 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002812`
名称	SmilChr03G002812
描述	uncharacterized SmilChr03G002812
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	44587177 - 44590718 / `+`

ID 对照

NCBI Gene ID	`LOC131015991`
GeneID	`131015991`
locus_tag	`-`
NCBI Name	`LOC131015991`
原始查询	`SmilChr03G002812`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Phosphoglycerate mutase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822292]; symbol=MEF14; hit=AT3G26780; species=arabidopsis; confidence=high
产物	Phosphoglycerate mutase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822292]; symbol=MEF14; hit=AT3G26780; species=arabidopsis; confidence=high
Arabidopsis	`AT3G26780` (MEF14) Phosphoglycerate mutase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822292] identity=68; qcov=0.814; evalue=3.35e-106; confidence=high
Rice	`Os11g0522000` - identity=60.4; qcov=0.807; evalue=6.47e-77; confidence=high
GO	-
KEGG	-
Pfam	PF00300 (His_Phos_1)
InterPro	-
eggNOG	-
NR	GeneID:131015991

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057800512.1`
2	Cytoplasm	细胞质	0.80000	`XP_057800514.1`
3	Nucleus	细胞核	0.20000	`XP_057800512.1`
4	Chromosome	染色体	0.00000	`XP_057800512.1`
5	Centromere	着丝粒	0.00000	`XP_057800512.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:44587715`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:44587743`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B131,B22,C53,C6
`Chr3:44587880`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:44587895`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,C13
`Chr3:44587916`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:44588160`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr3:44589816`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr3:44589873`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C55
`Chr3:44590027`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A19,B72,C84
`Chr3:44590048`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr3:44590097`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:44590098`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B130,C38

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800512.1

432 aa

216

432

His_Phos_1

PF00300 His_Phos_1 126-265 aa

XP_057800513.1

432 aa

216

432

His_Phos_1

PF00300 His_Phos_1 126-265 aa

XP_057800514.1

269 aa

134

269

His_Phos_1

PF00300 His_Phos_1 126-252 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800512.1`	Pfam	`PF00300`	His_Phos_1	Domain	126	265	2.7e-32	112.8	Histidine phosphatase superfamily (branch 1)
`XP_057800513.1`	Pfam	`PF00300`	His_Phos_1	Domain	126	265	2.7e-32	112.8	Histidine phosphatase superfamily (branch 1)
`XP_057800514.1`	Pfam	`PF00300`	His_Phos_1	Domain	126	252	6.3e-23	82.2	Histidine phosphatase superfamily (branch 1)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057944530.1
AATTGATGTGTGGATGAATCTAGTGACGGGGGTTCATGCCACTATCTTCCTCGGTTCCTCCCTAATTCACTTCCTATAAATAGAAAGTTAAATTTGGAGGAAGTGGTGGCGATTTTAGCTAAAACTGTAGGAAACCGGACGAAATGTTACCTAAGAGGCTCGTGCAAAGATAGATGCATGTCGGGGTAATTGGGCGGGATCTCATTTTGAAGCGGCTTGTCCCCGCCACATGGGCTCTTCGCAGTCCGCTCGAATCCCGT...

XM_057944529.1
TAGAAAGTTAAATTTGGAGGAAGTGGTGGCGATTTTAGCTAAAACTGTAGGAAACCGGACGAAATGTTACCTAAGAGGCTCGTGCAAAGATAGATGCATGTCGGGGTAATTGGGCGGGGTTAGTGTGAATCTGCTTTTTCCTGGATTAGATTAGATTCCTCAACACAAAAAGAAAAGAAAAGAAAAGGGGGAAAAAAAAAAGACATCAAAATTCTTAGTACAAAATTCCTGAATTTGAGATCTATTACATTTTCCTCTTA...

CDS

3 records

下载 CDS FASTA

LOC131015991
ATGGGCTCTTCGCAGTCCGCTCGAATCCCGTCGGAAGCCGAGGAGGAAGAAGAAGAAGAAGATGACGACGACGTCGAAGACGAAGAGGAGGAGGAGGACGACGCCGTCCCGCGCGACATTCCCGACAGCGCCGGCGACCATGCCGTGGTGAAGAAAATCCTGGAGCAGGAGCCGGAGATGCTGCCGTGCCACGCCTCCGCCTCACCGCTCTCCCCGCAGCTCTCCGCCTACGGCACGCCCCGCACGGGGCCTTCGATCAA...

Protein

3 records

下载 Protein FASTA

XP_057800512.1
MGSSQSARIPSEAEEEEEEEDDDDVEDEEEEEDDAVPRDIPDSAGDHAVVKKILEQEPEMLPCHASASPLSPQLSAYGTPRTGPSIKVWDPYNVLAPPPTLPPLPAHFHRGFSAVPADEDRAITEVYLVSHGECHMNLRPDLIAGRCPDAALTSNGKRQARALAVFLKSQGVRFSAIYTSPLDRARATAQAVCQELNFSEEHIQSSDALVEMSQGHWEGCHRSEVFTPNTVSLMEKFQPDFSAPSGESLRQVEFRMVQFL...

XP_057800513.1
MGSSQSARIPSEAEEEEEEEDDDDVEDEEEEEDDAVPRDIPDSAGDHAVVKKILEQEPEMLPCHASASPLSPQLSAYGTPRTGPSIKVWDPYNVLAPPPTLPPLPAHFHRGFSAVPADEDRAITEVYLVSHGECHMNLRPDLIAGRCPDAALTSNGKRQARALAVFLKSQGVRFSAIYTSPLDRARATAQAVCQELNFSEEHIQSSDALVEMSQGHWEGCHRSEVFTPNTVSLMEKFQPDFSAPSGESLRQVEFRMVQFL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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