当前解析结果
SmilChr03G002819| 统一新 Gene ID | SmilChr03G002819 |
|---|---|
| 名称 | SmilChr03G002819 |
| 描述 | uncharacterized SmilChr03G002819 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 44659604 - 44662456 / - |
| NCBI Gene ID | LOC131016018 |
|---|---|
| GeneID | 131016018 |
| locus_tag | - |
| NCBI Name | LOC131016018 |
| 原始查询 | SmilChr03G002819 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | translocon-associated protein beta (TRAPB) family protein [Source:NCBI gene (formerly Entrezgene);Acc:831251]; symbol=AT5G14030; hit=AT5G14030; species=arabidopsis; confidence=high |
| 产物 | translocon-associated protein beta (TRAPB) family protein [Source:NCBI gene (formerly Entrezgene);Acc:831251]; symbol=AT5G14030; hit=AT5G14030; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G14030 (AT5G14030)translocon-associated protein beta (TRAPB) family protein [Source:NCBI gene (formerly Entrezgene);Acc:831251] identity=66.7; qcov=0.9; evalue=1.57e-68; confidence=high |
| Rice | Os01g0102700- identity=60.8; qcov=0.812; evalue=9.23e-57; confidence=high |
| GO | GO:0005783 (endoplasmic reticulum) |
| KEGG | smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF05753 (TRAP_beta) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016018 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057800554.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057800554.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057800554.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057800554.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057800554.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:44660670 |
A |
AT |
1bp_insertion | frameshift_variant | 194 | A1,A10,A11,A13,A14,A15,A18,A2,A21,A22,A23,A3,A4,A6,A7,A8,B1,B100,B102,B105,B106,B107,B11,B110,B112,B113,B114,B115,B117,B118,B119,B121,B123,B124,B125,B126,B129,B130,B131,B132,B133,B136,B137,B139,B14,B140,B15,B16,B17,B19,B2,B20,B21,B23,B24,B25,B26,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B38,B39,B4,B40,B41,B42,B44,B45,B47,B48,B49,B5,B50,B52,B54,B55,B56,B57,B58,B60,B61,B62,B63,B64,B66,B68,B69,B7,B70,B71,B72,B73,B74,B75,B77,B78,B79,B8,B83,B84,B85,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B99,C1,C10,C11,C12,C14,C16,C20,C22,C23,C25,C26,C28,C29,C3,C31,C32,C33,C34,C35,C36,C37,C39,C40,C41,C44,C47,C48,C5,C50,C51,C52,C53,C54,C56,C57,C58,C59,C60,C61,C62,C63,C64,C65,C66,C68,C69,C7,C70,C71,C72,C73,C75,C76,C77,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,D1,D10,D11,D2,D3,D5,D6,D7,D8 |
Chr3:44660738 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr3:44660865 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr3:44660908 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B77,B99,C26 |
Chr3:44661068 |
A |
AG |
1bp_insertion | frameshift_variant | 17 | B16,B17,B26,B36,B47,B69,B77,B87,B90,B91,B92,C14,C26,C50,C81,D10,D6 |
Chr3:44661119 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,B38,B39,D7 |
Chr3:44661125 |
C |
T |
EMS_canonical_SNV | stop_gained | 24 | A6,B100,B107,B110,B119,B129,B133,B15,B34,B38,B41,B45,B5,B70,B83,B84,C22,C53,C59,C63,C70,C72,C76,C77 |
Chr3:44662127 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B25 |
Chr3:44662127 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B25 |
Chr3:44662256 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800554.1PF05753
TRAP_beta 16-155 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800554.1 |
Pfam | PF05753 |
TRAP_beta | Family | 16 | 155 | 4.9e-44 | 150.6 | Translocon-associated protein beta (TRAPB) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。