当前解析结果
SmilChr03G002826| 统一新 Gene ID | SmilChr03G002826 |
|---|---|
| 名称 | SmilChr03G002826 |
| 描述 | zinc finger protein 2-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 44748438 - 44749111 / - |
| NCBI Gene ID | LOC131016020 |
|---|---|
| GeneID | 131016020 |
| locus_tag | - |
| NCBI Name | LOC131016020 |
| 原始查询 | SmilChr03G002826 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger protein 2-like |
| 产物 | zinc finger protein 2-like |
| Arabidopsis | AT5G14010 (KNU)C2H2 and C2HC zinc fingers superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831249] identity=75.6; qcov=0.287; evalue=3.42e-15; confidence=weak |
| Rice | Os08g0555700- identity=42.1; qcov=0.531; evalue=1.59e-12; confidence=low |
| GO | GO:0009788 (negative regulation of abscisic acid-activated signaling pathway) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016020 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057800556.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057800556.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057800556.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057800556.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057800556.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:44748644 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B41,C41,C76 |
Chr3:44748768 |
G |
A |
EMS_canonical_SNV | stop_gained | 86 | A1,A10,A13,A16,A19,A2,A20,A21,A22,A23,A25,A3,A4,A6,B1,B109,B110,B111,B122,B124,B128,B130,B131,B14,B140,B15,B2,B21,B24,B25,B26,B27,B32,B33,B38,B39,B4,B41,B46,B5,B69,B74,B76,B77,B78,B8,B82,B86,B87,B91,B93,B94,B96,C15,C17,C19,C2,C20,C24,C26,C30,C36,C38,C40,C43,C45,C48,C5,C50,C52,C59,C60,C68,C7,C71,C76,C78,C79,C8,C81,C87,D10,D5,D7,D8,D9 |
Chr3:44748773 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | A22,C59,C8 |
Chr3:44748773 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A22,C59,C8 |
Chr3:44748838 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A6,B13,B26,B54 |
Chr3:44748881 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,B47 |
Chr3:44748898 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A23,B138,B31,B61 |
Chr3:44748921 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B130,B136,C33 |
Chr3:44748924 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B138,D6 |
Chr3:44748933 |
G |
A |
EMS_canonical_SNV | stop_gained | 13 | A13,A6,B11,B111,B140,B2,B74,C17,C19,C36,C38,C58,C86 |
Chr3:44748938 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:44748952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B130,C33 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。