当前解析结果
SmilChr03G002830| 统一新 Gene ID | SmilChr03G002830 |
|---|---|
| 名称 | SmilChr03G002830 |
| 描述 | uncharacterized protein At2g33490-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 44768569 - 44773386 / - |
| NCBI Gene ID | LOC131015974 |
|---|---|
| GeneID | 131015974 |
| locus_tag | - |
| NCBI Name | LOC131015974 |
| 原始查询 | SmilChr03G002830 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os09g0509300; species=rice; confidence=medium |
| 产物 | hit=Os09g0509300; species=rice; confidence=medium |
| Arabidopsis | AT2G33490 (AT2G33490)hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:817914] identity=43.4; qcov=1.02; evalue=5.02e-120; confidence=medium |
| Rice | Os09g0509300- identity=42.5; qcov=0.99; evalue=2.93e-127; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015974 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057800478.1 |
| 2 | Cytoplasmic vesicle | 细胞质囊泡 | 0.80000 | XP_057800475.1 |
| 3 | Trans-golgi network | Trans-golgi network | 0.80000 | XP_057800475.1 |
| 4 | Endosome | 内体 | 0.80000 | XP_057800475.1 |
| 5 | Vesicle | 囊泡 | 0.60000 | XP_057800475.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:44768919 |
A |
ATG |
2bp_insertion | frameshift_variant | 2 | B1,B100 |
Chr3:44768919 |
A |
ATG |
2bp_insertion | CDS_variant | 2 | B1,B100 |
Chr3:44768974 |
T |
TCG |
2bp_insertion | frameshift_variant | 38 | A14,A18,A3,B11,B112,B114,B117,B131,B134,B14,B20,B24,B25,B31,B38,B39,B45,B50,B51,B80,B89,B93,C17,C19,C27,C33,C43,C47,C51,C64,C66,C78,C83,C85,C9,D1,D3,D6 |
Chr3:44768979 |
A |
AC |
1bp_insertion | frameshift_variant | 7 | B48,B54,B86,C21,C4,C65,D10 |
Chr3:44769017 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,B2,B83,C59 |
Chr3:44769129 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B129,B58,C31 |
Chr3:44769283 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C55,D8 |
Chr3:44769429 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B102,C55,D8 |
Chr3:44769467 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,B2,B83,C59 |
Chr3:44769526 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr3:44769586 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,B2,B83,C59 |
Chr3:44769891 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,A21,B23,C13 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。