Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G002830

染色体: Chr03 坐标: 44768569-44773386 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G002830
名称SmilChr03G002830
描述uncharacterized protein At2g33490-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向44768569 - 44773386 / -

ID 对照

NCBI Gene IDLOC131015974
GeneID131015974
locus_tag-
NCBI NameLOC131015974
原始查询SmilChr03G002830

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述hit=Os09g0509300; species=rice; confidence=medium
产物hit=Os09g0509300; species=rice; confidence=medium
ArabidopsisAT2G33490 (AT2G33490)
hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:817914]
identity=43.4; qcov=1.02; evalue=5.02e-120; confidence=medium
RiceOs09g0509300
-
identity=42.5; qcov=0.99; evalue=2.93e-127; confidence=medium
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131015974

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057800478.1
2 Cytoplasmic vesicle 细胞质囊泡 0.80000 XP_057800475.1
3 Trans-golgi network Trans-golgi network 0.80000 XP_057800475.1
4 Endosome 内体 0.80000 XP_057800475.1
5 Vesicle 囊泡 0.60000 XP_057800475.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:44768919 A ATG 2bp_insertion frameshift_variant 2 B1,B100
Chr3:44768919 A ATG 2bp_insertion CDS_variant 2 B1,B100
Chr3:44768974 T TCG 2bp_insertion frameshift_variant 38 A14,A18,A3,B11,B112,B114,B117,B131,B134,B14,B20,B24,B25,B31,B38,B39,B45,B50,B51,B80,B89,B93,C17,C19,C27,C33,C43,C47,C51,C64,C66,C78,C83,C85,C9,D1,D3,D6
Chr3:44768979 A AC 1bp_insertion frameshift_variant 7 B48,B54,B86,C21,C4,C65,D10
Chr3:44769017 G A EMS_canonical_SNV CDS_variant 4 A1,B2,B83,C59
Chr3:44769129 C T EMS_canonical_SNV CDS_variant 3 B129,B58,C31
Chr3:44769283 C T EMS_canonical_SNV CDS_variant 2 C55,D8
Chr3:44769429 C T EMS_canonical_SNV CDS_variant 3 B102,C55,D8
Chr3:44769467 G A EMS_canonical_SNV CDS_variant 4 A1,B2,B83,C59
Chr3:44769526 G A EMS_canonical_SNV CDS_variant 1 B102
Chr3:44769586 G A EMS_canonical_SNV CDS_variant 4 A1,B2,B83,C59
Chr3:44769891 C T EMS_canonical_SNV CDS_variant 4 A11,A21,B23,C13

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057944496.1
GATTTGTGTGTCTAGTAAAGGTAAGATGTAATATTGATGGCCATAACAGCAGAGTTGCCTTTTCAATTTCGGCGCACAACGAATTTTGGGCTGAGTTGATAGCTCAGAGATGAAATCGTCGTTGCTGAGGATGCGGATTATCGGGCCGAATAAGGGCGACCCAAAGGGAAAATGGGATCATAATTTTTCGCTGCCTATCGATGGATTAACGCAAGCAACAAAGGATATGAAAGACATGAGAACGTGCTATGATAGTCTAC...
XM_057944495.1
AGTTGCCTTTTCAATTTCGGCGCACAACGTTAGAATTTTCTCTTCTACTGTTTCTTTCTCTCACTCAATTCTTCTTTCCCACACTTTTTTCCAACTGCTCTTTAATATTTGCTCCAATTCAGGGAATAAATAGACTTCTGCCTGTTGATTTTCCGAGTCAATTGTATTCCTAAATATTTTTCCCCAATTTCTGGGAGGGCAGGAATTTTGGGCTGAGTTGATAGCTCAGAGATGAAATCGTCGTTGCTGAGGATGCGGAT...

CDS

4 records

下载 CDS FASTA
LOC131015974
ATGAAATCGTCGTTGCTGAGGATGCGGATTATCGGGCCGAATAAGGGCGACCCAAAGGGAAAATGGGATCATAATTTTTCGCTGCCTATCGATGGATTAACGCAAGCAACAAAGGATATGAAAGACATGAGAACGTGCTATGATAGTCTACTTTCCGCCGCTGCAGCTACAGCAAATAGTGCTTATGAGTTTTCAGAGTCATTACTGGAAATGGGAAATTCTCTACTGGAAAAAACCACTATGCATGATGACAGAGAAAG...
LOC131015974
ATGAAATCGTCGTTGCTGAGGATGCGGATTATCGGGCCGAATAAGGGCGACCCAAAGGGAAAATGGGATCATAATTTTTCGCTGCCTATCGATGGATTAACGCAAGCAACAAAGGATATGAAAGACATGAGAACGTGCTATGATAGTCTACTTTCCGCCGCTGCAGCTACAGCAAATAGTGCTTATGAGTTTTCAGAGTCATTACTGGAAATGGGAAATTCTCTACTGGAAAAAACCACTATGCATGATGACAGAGAAAG...

Protein

4 records

下载 Protein FASTA
XP_057800475.1
MKSSLLRMRIIGPNKGDPKGKWDHNFSLPIDGLTQATKDMKDMRTCYDSLLSAAAATANSAYEFSESLLEMGNSLLEKTTMHDDRESRGALSMLGKVQLELQKLVDSYRFHIVMTITNPSECLLSELRKVEEMKLQCDEKREMFEYIVAQIKEKGKSRHGKGETFSLQQLKVVRDEYEEAARLCAFRVESLKQGQSRSLFTQAARHHAAQLNFFRKGLQSLEAVEPYIKNVAEKQHIDYELSELNEGEKDDREIISESND...
XP_057800476.1
MKSSLLRMRIIGPNKGDPKGKWDHNFSLPIDGLTQATKDMKDMRTCYDSLLSAAAATANSAYEFSESLLEMGNSLLEKTTMHDDRESRGALSMLGKVQLELQKLVDSYRFHIVMTITNPSECLLSELRKVEEMKLQCDEKREMFEYIVAQIKEKGKSRHGKGETFSLQQLKVVRDEYEEAARLCAFRVESLKQGQSRSLFTQAARHHAAQLNFFRKGLQSLEAVEPYIKNVAEKQHIDYELSELNEGEKDDREIISESND...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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