Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002848`

染色体: Chr03 坐标: 45038210-45040253 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002848`
名称	SmilChr03G002848
描述	exocyst complex component EXO70B1-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	45038210 - 45040253 / `-`

ID 对照

NCBI Gene ID	`LOC131015981`
GeneID	`131015981`
locus_tag	`-`
NCBI Name	`LOC131015981`
原始查询	`SmilChr03G002848`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	exocyst complex component EXO70B1-like
产物	exocyst complex component EXO70B1-like
Arabidopsis	`AT5G13990` (EXO70C2) exocyst subunit exo70 family protein C2 [Source:NCBI gene (formerly Entrezgene);Acc:831247] identity=44.4; qcov=1.06; evalue=2.63e-164; confidence=medium
Rice	`Os11g0167600` (OsEXO70C2) - identity=40.7; qcov=1.1; evalue=3.53e-149; confidence=medium
GO	GO:0000145 (exocyst); GO:0005546 (phosphatidylinositol-4,5-bisphosphate binding); GO:0006887 (exocytosis)
KEGG	-
Pfam	PF03081 (Exo70_C); PF20669 (Exo70_N)
InterPro	-
eggNOG	-
NR	GeneID:131015981

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057800494.1`
2	Cytoplasm	细胞质	0.60000	`XP_057800494.1`
3	Cytosol	细胞质基质	0.60000	`XP_057800494.1`
4	Nucleus	细胞核	0.00000	`XP_057800494.1`
5	Chromosome	染色体	0.00000	`XP_057800494.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:45038420`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr3:45038459`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr3:45038471`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B82,C58,C85
`Chr3:45038480`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C6,C75
`Chr3:45038501`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A21,A6,B123,B4,B66
`Chr3:45038558`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr3:45038671`	`TG`	`*`	1bp_deletion	CDS_variant	3	B125,C43,C65
`Chr3:45038687`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C26,C43,C65
`Chr3:45038714`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B132,D11
`Chr3:45038792`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr3:45038799`	`TG`	`T`	1bp_deletion	frameshift_variant	2	C44,C77
`Chr3:45038799`	`TG`	`T`	1bp_deletion	CDS_variant	2	C44,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800494.1

567 aa

284

567

Exo70_N

Exo70_C

PF20669 Exo70_N 47-125 aa PF03081 Exo70_C 197-552 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800494.1`	Pfam	`PF20669`	Exo70_N	Repeat	47	125	5.3e-08	33.7	Exocyst complex component Exo70 N-terminal
`XP_057800494.1`	Pfam	`PF03081`	Exo70_C	Repeat	197	552	1.7e-108	363.7	Exo70 exocyst complex subunit C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057944511.1
TAAAAGCTAAATAAAAAAATAAAGATATGCATAGGTGCATTTGAATTTGAAAGCATGAGGATGATGCGTAGTGGTGGCGAGCACGAGACGCATCTCCAACTAACTACCACAACCACCATTTCACCAAACTCTCTCCATCTCTTCATTCTCCCAAATTCTCTAACACCTTTGTTCAACGCCCATGGACGACAAAGAAGAGGAGCCACCCCCAGAAACGCCCGATCTCCCCACAATCTCCAATGAAATCGACCGCTACATCT...

CDS

1 records

下载 CDS FASTA

LOC131015981
ATGGACGACAAAGAAGAGGAGCCACCCCCAGAAACGCCCGATCTCCCCACAATCTCCAATGAAATCGACCGCTACATCTCGTCGCTGGAGTCGGGCGGCGACGCCGCGCCCATCGTCATGGAGAAATTCCTGATGCTGGTGGAGGAGAAAATGGACGGCTACGATTCGATGGAGAGCCACGTGAAATGGAGGCGCCTGAGAGAGGAAGACGCGGCGTGGTTCCTGGACGCCGTGGATCGCGTGACGTCGCTGTCGAATTC...

Protein

1 records

下载 Protein FASTA

XP_057800494.1
MDDKEEEPPPETPDLPTISNEIDRYISSLESGGDAAPIVMEKFLMLVEEKMDGYDSMESHVKWRRLREEDAAWFLDAVDRVTSLSNSLAKLASDYKYAYTINRAGSVVQRAMSYLEGELKVLLEEYTAADDDITSDLIRISKAMLAGGHKDECCHLYYVVRRDALEEHILQLGLEKLSIDDIHKKPWESLERDIELWILKFTTFAKDQFPAERNLLDSVFPAHPAIPETLFRGLTCGITKHILKFAEAVALTRRSPDKLF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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