Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002857`

染色体: Chr03 坐标: 45147077-45165612 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002857`
名称	SmilChr03G002857
描述	beta-glucosidase 12-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	45147077 - 45165612 / `+`

ID 对照

NCBI Gene ID	`LOC131015985`
GeneID	`131015985`
locus_tag	`-`
NCBI Name	`LOC131015985`
原始查询	`SmilChr03G002857`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	beta-glucosidase 12-like
产物	beta-glucosidase 12-like
Arabidopsis	`AT2G44480` (BGLU17) beta glucosidase 17 [Source:NCBI gene (formerly Entrezgene);Acc:819055] identity=58.6; qcov=0.924; evalue=9.22e-169; confidence=high
Rice	`Os04g0474800` (Os4bglu12) - identity=62.3; qcov=0.926; evalue=9.56e-176; confidence=high
GO	GO:0005975 (carbohydrate metabolic process); GO:0008422 (beta-glucosidase activity)
KEGG	smil00460 (Cyanoamino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00232 (Glyco_hydro_1)
InterPro	-
eggNOG	-
NR	GeneID:131015985

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.60000	`XP_057800502.1`
2	Secreted	分泌到胞外	0.40000	`XP_057800502.1`
3	Cell wall	细胞壁	0.20000	`XP_057800503.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057800503.1`
5	Nucleus	细胞核	0.00000	`XP_057800502.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:45147309`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr3:45152663`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr3:45152730`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr3:45161194`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,C39
`Chr3:45161400`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B73,B94,C78,D10
`Chr3:45161535`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B121,B130,B135,B65,C53
`Chr3:45161651`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B83
`Chr3:45161651`	`TG`	`T`	1bp_deletion	CDS_variant	1	B83
`Chr3:45161769`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr3:45162288`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:45164190`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr3:45164196`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C38

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800502.1

509 aa

254

509

Glyco_hydro_1

PF00232 Glyco_hydro_1 38-508 aa

XP_057800503.1

421 aa

210

421

Glyco_hydro_1

PF00232 Glyco_hydro_1 38-420 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800502.1`	Pfam	`PF00232`	Glyco_hydro_1	Domain	38	508	3.5e-148	494.7	Glycosyl hydrolase family 1
`XP_057800503.1`	Pfam	`PF00232`	Glyco_hydro_1	Domain	38	420	1.4e-118	397.1	Glycosyl hydrolase family 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944519.1
ACCGATAATAATATGGAACCAAACTAAATGAATCAAAATAGTAATAAATAACTATTAAATAGATATATAGCAGAGTTATCAATGTATAAACACATTATTTGGTTATTTAAATCCATGTAATTGATACTGAAGTCTGTATTTAATGGTGCGTGGAATGAGATGAAAGTTTCACATAACAAACAGCCATGCCTTCTCTTCCTGCCTCTCTCCTCATTATCTTCCTTCTATTTTTGGTGTCTTCATCTTTTGCAGGAAAAGCT...

XM_057944520.1
TTTAAATCCATGTAATTGATACTGAAGTCTGTATTTAATGGTGCGTGGAATGAGATGAAAGTTTCACATAACAAACAGCCATGCCTTCTCTTCCTGCCTCTCTCCTCATTATCTTCCTTCTATTTTTGGTGTCTTCATCTTTTGCAGGAAAAGCTTCAACTGATACGCCGTCGCCTCGCAATCTCAGTCGTCACAGTTTCCCGCCTGGTTTCATATTCGGAGCTGCCTCCTCTGCCTATCAATATGAAGGCGCTGCATTT...

CDS

2 records

下载 CDS FASTA

LOC131015985
ATGCCTTCTCTTCCTGCCTCTCTCCTCATTATCTTCCTTCTATTTTTGGTGTCTTCATCTTTTGCAGGAAAAGCTTCAACTGATACGCCGTCGCCTCGCAATCTCAGTCGTCACAGTTTCCCGCCTGGTTTCATATTCGGAGCTGCCTCCTCTGCCTATCAATATGAAGGCGCTGCATTTGAAGATGGGAGAGGACCAAGTATATGGGACACTTTCACCCACAAATATCCAGGAAAAATAGCTGACAGGACCAACGGGGA...

Protein

2 records

下载 Protein FASTA

XP_057800502.1
MPSLPASLLIIFLLFLVSSSFAGKASTDTPSPRNLSRHSFPPGFIFGAASSAYQYEGAAFEDGRGPSIWDTFTHKYPGKIADRTNGDVANDFYNRYKDDVETLKYIGVDSFRMSISWPRILPRGKLSAGVNKAGIAFYNNVFNELLARGIIPFVTIFHWEVPQALEDEYEGFLSPLIIDDLKDFAELCFKEFGDRIKNWITFNEPSIFITGGYVGDIGILAPGRCSDRAKCAQGNSATEPYIVAHNLLLSHAQIVKLYKQ...

XP_057800503.1
MPSLPASLLIIFLLFLVSSSFAGKASTDTPSPRNLSRHSFPPGFIFGAASSAYQYEGAAFEDGRGPSIWDTFTHKYPGKIADRTNGDVANDFYNRYKDDVETLKYIGVDSFRMSISWPRILPRGKLSAGVNKAGIAFYNNVFNELLARGIIPFVTIFHWEVPQALEDEYEGFLSPLIIDDLKDFAELCFKEFGDRIKNWITFNEPSIFITGGYVGDIGILAPGRCSDRAKCAQGNSATEPYIVAHNLLLSHAQIVKLYKQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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