Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002874`

染色体: Chr03 坐标: 45419925-45425806 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002874`
名称	SmilChr03G002874
描述	(2Z,6Z)-farnesyl diphosphate synthase CPT6, chloroplastic-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	45419925 - 45425806 / `+`

ID 对照

NCBI Gene ID	`LOC131016001`
GeneID	`131016001`
locus_tag	`-`
NCBI Name	`LOC131016001`
原始查询	`SmilChr03G002874`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	(2Z,6Z)-farnesyl diphosphate synthase CPT6, chloroplastic-like
产物	(2Z%2C6Z)-farnesyl diphosphate synthase CPT6%2C chloroplastic-like
Arabidopsis	`AT5G58770` (cPT4) Undecaprenyl pyrophosphate synthetase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835991] identity=50; qcov=0.78; evalue=1.11e-81; confidence=high
Rice	`Os01g0857200` - identity=49.2; qcov=0.787; evalue=3.52e-79; confidence=high
GO	GO:0002094 (GO:0002094); GO:0009409 (response to cold); GO:0009570 (chloroplast stroma); GO:0009668 (plastid membrane organization); GO:0016094 (polyprenol biosynthetic process)
KEGG	smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01255 (Prenyltransf)
InterPro	-
eggNOG	-
NR	GeneID:131016001

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057800528.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057800528.1`
3	Nucleus	细胞核	0.00000	`XP_057800528.1`
4	Chromosome	染色体	0.00000	`XP_057800528.1`
5	Centromere	着丝粒	0.00000	`XP_057800528.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:45420085`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B129,B23,B29,B81
`Chr3:45420164`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A10,B48
`Chr3:45425337`	`C`	`T`	EMS_canonical_SNV	stop_gained	15	A13,B129,B132,B34,B44,B61,B67,B75,B86,B97,C12,C33,C36,C46,D5
`Chr3:45425369`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr3:45425370`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr3:45425453`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr3:45425572`	`A`	`AAT`	2bp_insertion	frameshift_variant	6	A9,B56,B82,B96,C64,C66
`Chr3:45425640`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800528.1

306 aa

153

306

Prenyltransf

PF01255 Prenyltransf 78-302 aa

XP_057800529.1

305 aa

152

305

Prenyltransf

PF01255 Prenyltransf 78-301 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800528.1`	Pfam	`PF01255`	Prenyltransf	Family	78	302	2.4e-73	247.0	Putative undecaprenyl diphosphate synthase
`XP_057800529.1`	Pfam	`PF01255`	Prenyltransf	Family	78	301	6.2e-74	248.9	Putative undecaprenyl diphosphate synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944546.1
AAGAAAATTAAAAGAAAAATGGTGTCGCTACAGTTAACTACAATTGTTCCTGCAACATCAAGATTGCCATCTCCTCCCAATTATGCCTTGTATTCAACCACTGCACGAAAACGGACTGCGAAGGGACCGAATGCAATTACTGGGTGTTTTTCTTGTCCAACTAAGGCGTGTTTGGCGTCTTCCTCAGCTTTAGGAGAACATGAAACTGATTGGAAGAAAAGTGAAGCAATACCCAAACACGTCGCTATTATCATGGACGG...

XM_057944545.1
AAGAAAATTAAAAGAAAAATGGTGTCGCTACAGTTAACTACAATTGTTCCTGCAACATCAAGATTGCCATCTCCTCCCAATTATGCCTTGTATTCAACCACTGCACGAAAACGGACTGCGAAGGGACCGAATGCAATTACTGGGTGTTTTTCTTGTCCAACTAAGGCGTGTTTGGCGTCTTCCTCAGCTTTAGGAGAACATGAAACTGATTGGAAGAAAAGTGAAGCAATACCCAAACACGTCGCTATTATCATGGACGG...

CDS

2 records

下载 CDS FASTA

LOC131016001
ATGGTGTCGCTACAGTTAACTACAATTGTTCCTGCAACATCAAGATTGCCATCTCCTCCCAATTATGCCTTGTATTCAACCACTGCACGAAAACGGACTGCGAAGGGACCGAATGCAATTACTGGGTGTTTTTCTTGTCCAACTAAGGCGTGTTTGGCGTCTTCCTCAGCTTTAGGAGAACATGAAACTGATTGGAAGAAAAGTGAAGCAATACCCAAACACGTCGCTATTATCATGGACGGAAATGGAAGGTGGGCTAA...

Protein

2 records

下载 Protein FASTA

XP_057800528.1
MVSLQLTTIVPATSRLPSPPNYALYSTTARKRTAKGPNAITGCFSCPTKACLASSSALGEHETDWKKSEAIPKHVAIIMDGNGRWAKNRMLPVQDGHQAGLQNLTGLIFNCCELGIKTLTTFIFSEDNWRRSKIEVDYLMRAIENNIRSHVKELITSRHNIQFFAIGNKSRLPESLQNTISWAEKMSQGNKGMNVVMAVSYSGHDDIVEATKKIATKVELGILRVTDINETMFEQELMTNIVEFPNPDLLIRTSGELRIS...

XP_057800529.1
MVSLQLTTIVPATSRLPSPPNYALYSTTARKRTAKGPNAITGCFSCPTKACLASSSALGEHETDWKKSEAIPKHVAIIMDGNGRWAKNRMLPVQDGHQAGLQNLTGLIFNCCELGIKTLTTFIFSEDNWRRSKIEVDYLMRAIENNIRSHVKELITRHNIQFFAIGNKSRLPESLQNTISWAEKMSQGNKGMNVVMAVSYSGHDDIVEATKKIATKVELGILRVTDINETMFEQELMTNIVEFPNPDLLIRTSGELRISN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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