当前解析结果
SmilChr03G002878| 统一新 Gene ID | SmilChr03G002878 |
|---|---|
| 名称 | SmilChr03G002878 |
| 描述 | uncharacterized SmilChr03G002878 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 45457261 - 45460335 / - |
| NCBI Gene ID | LOC131018872 |
|---|---|
| GeneID | 131018872 |
| locus_tag | - |
| NCBI Name | LOC131018872 |
| 原始查询 | SmilChr03G002878 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=low |
| 产物 | hit=Os08g0202300; species=rice; confidence=low |
| Arabidopsis | AT3G01410 (AT3G01410)Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319] identity=33.6; qcov=0.146; evalue=3.97e-12; confidence=weak |
| Rice | Os08g0202300- identity=31.6; qcov=0.361; evalue=1.82e-59; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018872 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803551.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057803551.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057803551.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803551.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803551.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:45457269 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B14,B89 |
Chr3:45457270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C45 |
Chr3:45457273 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B23,C27,C64 |
Chr3:45457280 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B23,C64 |
Chr3:45457295 |
AC |
A |
1bp_deletion | frameshift_variant | 32 | A1,A14,A20,A23,B10,B107,B108,B109,B11,B120,B125,B139,B3,B47,B50,B56,B58,B63,B84,B9,B95,B96,C22,C23,C25,C33,C41,C42,C56,C57,C73,C76 |
Chr3:45457305 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr3:45457307 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B120,B23,C16,C64 |
Chr3:45457345 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:45457347 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr3:45457360 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr3:45457385 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr3:45457397 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803551.1PF00078
RVT_1 269-428 aa
PF17919
RT_RNaseH_2 492-590 aa
PF17917
RT_RNaseH 523-619 aa
PF00075
RNase_H 667-752 aa
PF13456
RVT_3 671-788 aa
PF17921
Integrase_H2C2 879-935 aa
PF00665
rve 954-1024 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803551.1 |
Pfam | PF00078 |
RVT_1 | Domain | 269 | 428 | 1.1e-33 | 117.5 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057803551.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 492 | 590 | 2.3e-24 | 86.0 | RNase H-like domain found in reverse transcriptase |
XP_057803551.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 523 | 619 | 8.7e-20 | 71.6 | RNase H-like domain found in reverse transcriptase |
XP_057803551.1 |
Pfam | PF00075 |
RNase_H | Domain | 667 | 752 | 3.8e-08 | 34.3 | RNase H |
XP_057803551.1 |
Pfam | PF13456 |
RVT_3 | Domain | 671 | 788 | 1.3e-18 | 67.8 | Reverse transcriptase-like |
XP_057803551.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 879 | 935 | 5.3e-10 | 40.0 | Integrase zinc binding domain |
XP_057803551.1 |
Pfam | PF00665 |
rve | Domain | 954 | 1024 | 1.1e-08 | 35.9 | Integrase core domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。