Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G002892

染色体: Chr03 坐标: 45607948-45610801 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G002892
名称SmilChr03G002892
描述probable phytol kinase 2, chloroplastic
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向45607948 - 45610801 / -

ID 对照

NCBI Gene IDLOC131016051
GeneID131016051
locus_tag-
NCBI NameLOC131016051
原始查询SmilChr03G002892

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Arabidopsis/Rice homolog
描述probable phytol kinase 2, chloroplastic
产物probable phytol kinase 2%2C chloroplastic
ArabidopsisAT5G58560 (FOLK)
Phosphatidate cytidylyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835969]
identity=55.4; qcov=0.777; evalue=1.47e-51; confidence=high
RiceOs01g0832000 (CDS5)
-
identity=59.2; qcov=0.726; evalue=4.26e-53; confidence=high
GOGO:0016301 (kinase activity)
KEGGsmil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam-
InterPro-
eggNOG-
NRGeneID:131016051

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 1.00000 XP_057800582.1
2 Endoplasmic reticulum membrane 内质网膜 1.00000 XP_057800582.1
3 Chloroplast 叶绿体 0.60000 XP_057800584.1
4 Chloroplast thylakoid 类囊体 0.20000 XP_057800584.1
5 Chloroplast thylakoid membrane 类囊体膜 0.20000 XP_057800584.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:45608127 C T EMS_canonical_SNV CDS_variant 1 C52
Chr3:45608228 TG T 1bp_deletion frameshift_variant 1 B35
Chr3:45608228 TG T 1bp_deletion CDS_variant 1 B35
Chr3:45608239 C T EMS_canonical_SNV CDS_variant 1 B94
Chr3:45608415 G A EMS_canonical_SNV CDS_variant 1 D11
Chr3:45608440 C T EMS_canonical_SNV CDS_variant 2 B77,D10
Chr3:45608470 C T EMS_canonical_SNV CDS_variant 5 A14,B102,B50,C33,C42
Chr3:45608685 C T EMS_canonical_SNV CDS_variant 5 B108,B73,C32,C60,C68
Chr3:45609611 C T EMS_canonical_SNV CDS_variant 1 B130
Chr3:45609618 C T EMS_canonical_SNV CDS_variant 1 B130
Chr3:45610526 G A EMS_canonical_SNV CDS_variant 4 B75,C33,D11,D6

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057944599.1
CATAAATATTTCACGTACTGTTTTTTTTTTTTTCTTCTAGAAAATATATACGTAACCACTTAAACAGAACCAAAACAAGCACACTGACTATAATTAGCCATAAACACAATTTATTTCTCAAACCAAAAAAGTACTAGGCTAGGCTCCAACAATTTCTCAACGGGGGTTTTAAGGCGAATTGGTTGGAATTTCTTCAGCTGCCGAAATAGCAAGTCGACGAGGGCTCGCCGTGAAGTGACGTCAGCCGCGACAATGTTCTC...
XM_057944601.1
AACAGAACCAAAACAAGCACACTGACTATAATTAGCCATAAACACAATTTATTTCTCAAACCAAAAAAGTACTAGGCTAGGCTCCAACAATTTCTCAACGGGGGTTTTAAGGCGAATTGGTTGGAATTTCTTCAGCTGCCGAAATAGCAAGTCGACGAGGGCTCGCCGTGAAGTGACGTCAGCCGCGACAATGTTCTCCAACAACGTCGTTATCAGTGACATCATCGCCGGTGGCTTGTCGGTTGGGATTACGGTTTCCT...

CDS

2 records

下载 CDS FASTA
LOC131016051
ATGTTCTCCAACAACGTCGTTATCAGTGACATCATCGCCGGTGGCTTGTCGGTTGGGATTACGGTTTCCTTGCTCAAATTGTTAGAACAAACAGCTACCAGAGGCGTCTTTGAACAGAAATTGAATAGGAAGCTTGTGCACATTAGCTTTGGATTAGTGTTCATGCTTTGCTGGCCTATGTTCAGTTCTGGTCGCCTTGGAGCAGTTGTAGCATCTCTTATTCCTGGTATGAATATCATCAACATGCTTCTTTTGGGATT...
LOC131016051
ATGTTCTCCAACAACGTCGTTATCAGTGACATCATCGCCGGTGGCTTGTCGGTTGGGATTACGGTTTCCTTGCTCAAATTGTTAGAACAAACAGCTACCAGAGGCGTCTTTGAACAGAAATTGAATAGGAAGCTTGTGCACATTAGCTTTGGATTAGTGTTCATGCTTTGCTGGCCTATGTTCAGTTCTGGTCGCCTTGGAGCAGTTGTAGCATCTCTTATTCCTGGTATGAATATCATCAACATGCTTCTTTTGGGATT...

Protein

2 records

下载 Protein FASTA
XP_057800582.1
MFSNNVVISDIIAGGLSVGITVSLLKLLEQTATRGVFEQKLNRKLVHISFGLVFMLCWPMFSSGRLGAVVASLIPGMNIINMLLLGFGIWKNDATVKSMTRNNDHRELLKGPLYYASALTLFTAIYWRTSPIAIAGLCNVCAGDGVADIFGRRFGRRKLPYNRDKTVAGSIAMACAGFFASVGYMIYFLWLGYIQGTFKLVVGFLVVSIASAVVESHPKSTELDDNLTVPLAVVFVGSLVF
XP_057800584.1
MFSNNVVISDIIAGGLSVGITVSLLKLLEQTATRGVFEQKLNRKLVHISFGLVFMLCWPMFSSGRLGAVVASLIPGMNIINMLLLGFGIWKNDATVKSMTRNNDHRELLKGPLYYASALTLFTAIYWRTSPIAIAGLCNAWPTFSGGALAAENFPTIETKPWLVVSRWRVLVSSLLLDT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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