Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002899`

染色体: Chr03 坐标: 45703259-45704890 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002899`
名称	SmilChr03G002899
描述	pentatricopeptide repeat-containing protein At5g56310-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	45703259 - 45704890 / `-`

ID 对照

NCBI Gene ID	`LOC131016056`
GeneID	`131016056`
locus_tag	`-`
NCBI Name	`LOC131016056`
原始查询	`SmilChr03G002899`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At5g56310-like
产物	pentatricopeptide repeat-containing protein At5g56310-like
Arabidopsis	`AT5G66520` (AT5G66520) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836784] identity=38; qcov=0.949; evalue=1.16e-109; confidence=medium
Rice	`Os11g0483950` - identity=50.3; qcov=0.937; evalue=3.69e-136; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131016056

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057800594.1`
2	Nucleus	细胞核	0.00000	`XP_057800594.1`
3	Chromosome	染色体	0.00000	`XP_057800594.1`
4	Centromere	着丝粒	0.00000	`XP_057800594.1`
5	Chromatin	染色质	0.00000	`XP_057800594.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:45703391`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr3:45703397`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr3:45703599`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B10,B15,C22,C28,C51
`Chr3:45703610`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr3:45703616`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A22,B88
`Chr3:45703667`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr3:45703688`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A6
`Chr3:45703822`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B10,B15,C22,C28,C51
`Chr3:45703955`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B104,B74,C8
`Chr3:45704231`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr3:45704464`	`TCG`	`T`	2bp_deletion	frameshift_variant	1	B132
`Chr3:45704464`	`TCG`	`T`	2bp_deletion	CDS_variant	1	B132

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800594.1

494 aa

247

494

PPR_2

PPR

PPR_3

PPR

PPR_1

PPR_2

PPR

E_motif

PF13041 PPR_2 112-161 aa PF01535 PPR 116-145 aa PF01535 PPR 188-214 aa PF01535 PPR 217-246 aa PF13812 PPR_3 237-298 aa PF01535 PPR 289-316 aa PF12854 PPR_1 314-342 aa PF13041 PPR_2 314-360 aa PF01535 PPR 318-342 aa PF01535 PPR 354-376 aa PF01535 PPR 387-410 aa PF20431 E_motif 430-490 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800594.1`	Pfam	`PF13041`	PPR_2	Repeat	112	161	2.6e-38	130.6	PPR repeat family
`XP_057800594.1`	Pfam	`PF01535`	PPR	Repeat	116	145	8e-43	142.4	PPR repeat
`XP_057800594.1`	Pfam	`PF01535`	PPR	Repeat	188	214	8e-43	142.4	PPR repeat
`XP_057800594.1`	Pfam	`PF01535`	PPR	Repeat	217	246	8e-43	142.4	PPR repeat
`XP_057800594.1`	Pfam	`PF13812`	PPR_3	Repeat	237	298	6.6e-13	49.2	Pentatricopeptide repeat domain
`XP_057800594.1`	Pfam	`PF01535`	PPR	Repeat	289	316	8e-43	142.4	PPR repeat
`XP_057800594.1`	Pfam	`PF12854`	PPR_1	Repeat	314	342	9.5e-22	77.2	PPR repeat
`XP_057800594.1`	Pfam	`PF13041`	PPR_2	Repeat	314	360	2.6e-38	130.6	PPR repeat family
`XP_057800594.1`	Pfam	`PF01535`	PPR	Repeat	318	342	8e-43	142.4	PPR repeat
`XP_057800594.1`	Pfam	`PF01535`	PPR	Repeat	354	376	8e-43	142.4	PPR repeat
`XP_057800594.1`	Pfam	`PF01535`	PPR	Repeat	387	410	8e-43	142.4	PPR repeat
`XP_057800594.1`	Pfam	`PF20431`	E_motif	Repeat	430	490	3.5e-15	56.7	E motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057944611.1
AAATAAAAAAATAATTAAAAATTACTCCATAACATAATAAGAATGGTATATAGTGGCACACATTGTATCGTGAGACGGAGAATCCCATATGATGTTTTCCATGCTAGAATGCGGAGGGCAACAGAATTCGCAAGACTCTCCGTCGCCCACCGCCGCGCAATAACTTCATCATCTCTGCACCAAACGCCACCGCCACTCTCTCTAGCGGCGGACAAATGCCAATCGATGGACCAGCTGAAGCAAATACATGCCCAGATGAT...

CDS

1 records

下载 CDS FASTA

LOC131016056
ATGGTATATAGTGGCACACATTGTATCGTGAGACGGAGAATCCCATATGATGTTTTCCATGCTAGAATGCGGAGGGCAACAGAATTCGCAAGACTCTCCGTCGCCCACCGCCGCGCAATAACTTCATCATCTCTGCACCAAACGCCACCGCCACTCTCTCTAGCGGCGGACAAATGCCAATCGATGGACCAGCTGAAGCAAATACATGCCCAGATGATTACCACCGCCCAAATTCAAGACGCCTTCGCCGCCAGCCGCCT...

Protein

1 records

下载 Protein FASTA

XP_057800594.1
MVYSGTHCIVRRRIPYDVFHARMRRATEFARLSVAHRRAITSSSLHQTPPPLSLAADKCQSMDQLKQIHAQMITTAQIQDAFAASRLINFCALSDSGDLSYALKLFADIPAPNTFIWNTLIRAHAISSNPAAGLLLYSEMRRRGIAPGKHTFPFVLKACANSKLVRCGEQIHGHVLTFGLDCDSHVANALIRAYSVSERIGDARRVFDETPERNLIVWTTIICGYAQNNSAEEAIALFHAMVSEGFEPRGVVLASVLSAC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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