Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002902`

染色体: Chr03 坐标: 45768550-45773712 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002902`
名称	SmilChr03G002902
描述	ATPase family AAA domain-containing protein FIGL1
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	45768550 - 45773712 / `-`

ID 对照

NCBI Gene ID	`LOC131016079`
GeneID	`131016079`
locus_tag	`-`
NCBI Name	`LOC131016079`
原始查询	`SmilChr03G002902`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ATPase family AAA domain-containing protein FIGL1
产物	ATPase family AAA domain-containing protein FIGL1
Arabidopsis	`AT3G27120` (AT3G27120) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822331] identity=66.6; qcov=0.975; evalue=0; confidence=high
Rice	`Os12g0443800` (OsFIGNL1) - identity=63.3; qcov=1.01; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF00004 (AAA); PF07728 (AAA_5); PF09336 (Vps4_C); PF17862 (AAA_lid_3); PF24347 (FIGL1_N)
InterPro	-
eggNOG	-
NR	GeneID:131016079

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057800635.1`
2	Nucleus	细胞核	0.20000	`XP_057800635.1`
3	Cytoplasm	细胞质	0.20000	`XP_057800635.1`
4	Chromosome	染色体	0.00000	`XP_057800635.1`
5	Centromere	着丝粒	0.00000	`XP_057800635.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:45769541`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:45769906`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B124
`Chr3:45771557`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr3:45772569`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B15,C28,C51
`Chr3:45772582`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B18,B19,B85
`Chr3:45772681`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B16,B38,B39,B4,B40
`Chr3:45772695`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B124
`Chr3:45773437`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B10,B15,C22,C28,C51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800635.1

667 aa

334

667

FIGL1_N

AAA_5

AAA

AAA_lid_3

Vps4_C

PF24347 FIGL1_N 24-96 aa PF07728 AAA_5 426-547 aa PF00004 AAA 426-556 aa PF17862 AAA_lid_3 581-621 aa PF09336 Vps4_C 629-663 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800635.1`	Pfam	`PF24347`	FIGL1_N	Domain	24	96	1.8e-35	121.3	FIGL1 N-terminal domain
`XP_057800635.1`	Pfam	`PF07728`	AAA_5	Domain	426	547	2.8e-05	24.9	AAA domain (dynein-related subfamily)
`XP_057800635.1`	Pfam	`PF00004`	AAA	Domain	426	556	1.7e-39	136.0	ATPase family associated with various cellular activities (AAA)
`XP_057800635.1`	Pfam	`PF17862`	AAA_lid_3	Domain	581	621	9.6e-10	38.5	AAA+ lid domain
`XP_057800635.1`	Pfam	`PF09336`	Vps4_C	Domain	629	663	1e-08	35.7	Vps4 C terminal oligomerisation domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057944652.1
AACATTGTCCATATAACACATATAAATACACACTACACTGCTGACAAAAAAATAAATACACACTACACTATTGGATTTGAATTTAATATCAGCGGAGCGAAAATGGCGGGAAATGAGGCGATGGCTGCTTCGCTGGTCTCGAAGCCGAAGGTCGACGGCGAATCGGGGTTGTGCTGGAGAAAGGAAGTCGATCAGAACCTCAAGCGGCTGCAATCGCTTCTATTTGGCGCGGACGCGGCCCTGGAAAAGGGGGATTTTGG...

CDS

1 records

下载 CDS FASTA

LOC131016079
ATGGCGGGAAATGAGGCGATGGCTGCTTCGCTGGTCTCGAAGCCGAAGGTCGACGGCGAATCGGGGTTGTGCTGGAGAAAGGAAGTCGATCAGAACCTCAAGCGGCTGCAATCGCTTCTATTTGGCGCGGACGCGGCCCTGGAAAAGGGGGATTTTGGCTCGGCGCAAGCGCTGTCCCTCGCGCTCATCGGCTTCCTCGACTCTCACTCGCAATGTTCGGTAGATGAGTCGTTCATCCGGCCTATCCGCCGTGATGCCGT...

Protein

1 records

下载 Protein FASTA

XP_057800635.1
MAGNEAMAASLVSKPKVDGESGLCWRKEVDQNLKRLQSLLFGADAALEKGDFGSAQALSLALIGFLDSHSQCSVDESFIRPIRRDAVSRLGSARRASIPDSDRQAFAQAGKDIGCIFRHKGDIDLEKIKQSRYFWSLFPESCERTAYELRKESDKQGGLKTSKTLVQAKLTSLYGSGSKESNSNFMKDKFSEDCAVIEKNYSSHNYRQNHSMSAITKAEEEEGAYGVSFKTKRLHRESSSPRVENVKSPSCCEEADVDAP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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