Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002903`

染色体: Chr03 坐标: 45774815-45777866 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002903`
名称	SmilChr03G002903
描述	SWI/SNF complex component SNF12 homolog
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	45774815 - 45777866 / `-`

ID 对照

NCBI Gene ID	`LOC131016083`
GeneID	`131016083`
locus_tag	`-`
NCBI Name	`LOC131016083`
原始查询	`SmilChr03G002903`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SWI/SNF complex component SNF12 homolog
产物	SWI/SNF complex component SNF12 homolog
Arabidopsis	`AT5G14170` (CHC1) SWIB/MDM2 domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831267] identity=67.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os04g0382100` (OsSWIB) - identity=70.4; qcov=0.611; evalue=2.79e-178; confidence=high
GO	GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0016514 (SWI/SNF complex)
KEGG	smil03082 (ATP-dependent chromatin remodeling - Salvia miltiorrhiza (redroot sage))
Pfam	PF02201 (SWIB); PF29592 (SWIFT)
InterPro	-
eggNOG	-
NR	GeneID:131016083

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057800639.1`
2	Nucleoplasm	核质	0.80000	`XP_057800639.1`
3	Chromosome	染色体	0.00000	`XP_057800639.1`
4	Centromere	着丝粒	0.00000	`XP_057800639.1`
5	Chromatin	染色质	0.00000	`XP_057800639.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:45775851`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,C23
`Chr3:45775947`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B125,C73
`Chr3:45776140`	`GC`	`G`	1bp_deletion	frameshift_variant	1	A15
`Chr3:45776140`	`GC`	`G`	1bp_deletion	CDS_variant	1	A15
`Chr3:45776553`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B48,B59
`Chr3:45776617`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr3:45776673`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr3:45776891`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr3:45777027`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B48,B59
`Chr3:45777170`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800639.1

542 aa

271

542

SWIFT

SWIB

PF29592 SWIFT 208-320 aa PF02201 SWIB 327-399 aa

XP_057800640.1

542 aa

271

542

SWIFT

SWIB

PF29592 SWIFT 208-320 aa PF02201 SWIB 327-399 aa

XP_057800641.1

542 aa

271

542

SWIFT

SWIB

PF29592 SWIFT 208-320 aa PF02201 SWIB 327-399 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800639.1`	Pfam	`PF29592`	SWIFT	Domain	208	320	1.4e-22	80.6	SWIFT domain
`XP_057800639.1`	Pfam	`PF02201`	SWIB	Domain	327	399	1.5e-21	76.6	SWIB/MDM2 domain
`XP_057800640.1`	Pfam	`PF29592`	SWIFT	Domain	208	320	1.4e-22	80.6	SWIFT domain
`XP_057800640.1`	Pfam	`PF02201`	SWIB	Domain	327	399	1.5e-21	76.6	SWIB/MDM2 domain
`XP_057800641.1`	Pfam	`PF29592`	SWIFT	Domain	208	320	1.4e-22	80.6	SWIFT domain
`XP_057800641.1`	Pfam	`PF02201`	SWIB	Domain	327	399	1.5e-21	76.6	SWIB/MDM2 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057944656.1
AATCGGCCCGGCCCATCACGTTTAAAGCTCATCGAATGAGAAGACAACCAGAAAACTGACGAACTCGAAGTCGCTGACTCGCCGAGCTACTATCAAAGACGGCGCGCGTAGAAGCCTAATTCACCAACCCAGCTAAATTCTGAGCCGTAATTCTTCCTGAAGGCTTCTGGAAATGCTTAGGTAAAACTACAGATTCACTTGGGTTTTGCGTTTGCTCGTAGATACAGCCATGGCCGCGAATAACAACAATCCTCAAAAGA...

XM_057944658.1
TTTAAAGCTCATCGAATGAGAAGACAACCAGAAAACTGACGAACTCGAAGTCGCTGACTCGCCGAGCTACTATCAAAGACGGCGCGCGTAGAAGCCTAATTCACCAACCCAGCTAAATTCTGAGCCGTAATTCTTCCTATACAGCCATGGCCGCGAATAACAACAATCCTCAAAAGAACATTGGGGCTTCATCCCCTTTTGGGAATTCTATGCCTGTGAATCCTTCACTGCAGCAGCAACTGGGGTCTGGATTTCAGGGC...

CDS

3 records

下载 CDS FASTA

LOC131016083
ATGGCCGCGAATAACAACAATCCTCAAAAGAACATTGGGGCTTCATCCCCTTTTGGGAATTCTATGCCTGTGAATCCTTCACTGCAGCAGCAACTGGGGTCTGGATTTCAGGGCCAGTTTCAGTTTTCAGAAGCTCAGGCGCAAGCGCTTGCCCAGGCTCAGTCGAAAGCACAGGCGCAAGCTCAGGCTCAGGTGCAGGCTCATGCCCATGCTCAAATGATGGCAGCTCATGCACAACTGCAAGCACAGTTGCAAGCTGC...

Protein

3 records

下载 Protein FASTA

XP_057800639.1
MAANNNNPQKNIGASSPFGNSMPVNPSLQQQLGSGFQGQFQFSEAQAQALAQAQSKAQAQAQAQVQAHAHAQMMAAHAQLQAQLQAAQGLSFNQGHPGGMGNLGSQSPSLSGAGSVGAKRFPQKPPARPPSFITSNVASPMRPMDASAAARRKKQKLPEKQLHERVAAILPESALYTQLLEFESRVDAALTRKKIDIQDALKTPTYLQKTLRIYVFNTFANQIRTIPKKPNAEPPTWTLKIIGRILEEGMDADQAAMMQK...

XP_057800640.1
MAANNNNPQKNIGASSPFGNSMPVNPSLQQQLGSGFQGQFQFSEAQAQALAQAQSKAQAQAQAQVQAHAHAQMMAAHAQLQAQLQAAQGLSFNQGHPGGMGNLGSQSPSLSGAGSVGAKRFPQKPPARPPSFITSNVASPMRPMDASAAARRKKQKLPEKQLHERVAAILPESALYTQLLEFESRVDAALTRKKIDIQDALKTPTYLQKTLRIYVFNTFANQIRTIPKKPNAEPPTWTLKIIGRILEEGMDADQAAMMQK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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