当前解析结果
SmilChr03G002912| 统一新 Gene ID | SmilChr03G002912 |
|---|---|
| 名称 | SmilChr03G002912 |
| 描述 | probable calcium-binding protein CML31 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 45866385 - 45867144 / - |
| NCBI Gene ID | LOC131016131 |
|---|---|
| GeneID | 131016131 |
| locus_tag | - |
| NCBI Name | LOC131016131 |
| 原始查询 | SmilChr03G002912 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable calcium-binding protein CML31 |
| 产物 | probable calcium-binding protein CML31 |
| Arabidopsis | AT1G76650 (CML38)calmodulin-like 38 [Source:NCBI gene (formerly Entrezgene);Acc:843998] identity=50; qcov=0.922; evalue=3.44e-40; confidence=medium |
| Rice | Os01g0955100 (OsCML31)- identity=51.1; qcov=0.986; evalue=1.05e-42; confidence=medium |
| GO | GO:0005509 (calcium ion binding) |
| KEGG | smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13499 (EF-hand_7); PF13833 (EF-hand_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016131 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057800738.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057800738.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057800738.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057800738.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057800738.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:45866677 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,D10 |
Chr3:45866767 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C6,C75 |
Chr3:45866782 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr3:45866820 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B53,C43,D1 |
Chr3:45866822 |
G |
GCT |
2bp_insertion | frameshift_variant | 7 | B14,B26,B53,C1,C31,C8,D1 |
Chr3:45866942 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | A2 |
Chr3:45866942 |
TC |
T |
1bp_deletion | CDS_variant | 1 | A2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800738.1PF13499
EF-hand_7 4-63 aa
PF13202
EF-hand_5 6-28 aa
PF13833
EF-hand_8 16-65 aa
PF13202
EF-hand_5 47-64 aa
PF13499
EF-hand_7 74-137 aa
PF13833
EF-hand_8 88-137 aa
PF00036
EF-hand_1 114-137 aa
PF13202
EF-hand_5 118-136 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800738.1 |
Pfam | PF13499 |
EF-hand_7 | Domain | 4 | 63 | 3.2e-22 | 79.4 | EF-hand domain pair |
XP_057800738.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 6 | 28 | 2.3e-16 | 59.1 | EF hand |
XP_057800738.1 |
Pfam | PF13833 |
EF-hand_8 | Domain | 16 | 65 | 8.2e-14 | 51.8 | EF-hand domain pair |
XP_057800738.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 47 | 64 | 2.3e-16 | 59.1 | EF hand |
XP_057800738.1 |
Pfam | PF13499 |
EF-hand_7 | Domain | 74 | 137 | 3.2e-22 | 79.4 | EF-hand domain pair |
XP_057800738.1 |
Pfam | PF13833 |
EF-hand_8 | Domain | 88 | 137 | 8.2e-14 | 51.8 | EF-hand domain pair |
XP_057800738.1 |
Pfam | PF00036 |
EF-hand_1 | Domain | 114 | 137 | 4.9e-24 | 82.8 | EF hand domain |
XP_057800738.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 118 | 136 | 2.3e-16 | 59.1 | EF hand |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。