当前解析结果
SmilChr03G002943| 统一新 Gene ID | SmilChr03G002943 |
|---|---|
| 名称 | SmilChr03G002943 |
| 描述 | uncharacterized SmilChr03G002943 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 46163765 - 46168829 / + |
| NCBI Gene ID | LOC131016080 |
|---|---|
| GeneID | 131016080 |
| locus_tag | - |
| NCBI Name | LOC131016080 |
| 原始查询 | SmilChr03G002943 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831556]; symbol=AT5G16930; hit=AT5G16930; species=arabidopsis; confidence=high |
| 产物 | AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831556]; symbol=AT5G16930; hit=AT5G16930; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G16930 (AT5G16930)AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831556] identity=78.8; qcov=1.02; evalue=0; confidence=high |
| Rice | Os02g0697600- identity=71.8; qcov=0.992; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005739 (mitochondrion); GO:0007005 (mitochondrion organization); GO:0008270 (zinc ion binding); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF12037 (ATAD3_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016080 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057800636.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057800636.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 0.60000 | XP_057800636.1 |
| 4 | Mitochondrion outer membrane | 线粒体外膜 | 0.20000 | XP_057800636.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057800636.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:46164168 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B132,B64,C24 |
Chr3:46164219 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr3:46164230 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr3:46164594 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B139,C8 |
Chr3:46164634 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr3:46165380 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr3:46165656 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr3:46165665 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A2,C39,D11 |
Chr3:46167905 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A2,C39,D11 |
Chr3:46167915 |
C |
T |
EMS_canonical_SNV | stop_gained | 131 | A1,A11,A13,A15,A18,A19,A20,A21,A23,A24,B100,B101,B102,B103,B105,B11,B111,B113,B115,B117,B118,B12,B121,B124,B127,B13,B130,B132,B133,B135,B139,B14,B140,B15,B17,B18,B24,B25,B28,B31,B32,B33,B37,B38,B41,B42,B43,B44,B48,B49,B5,B50,B51,B52,B53,B54,B56,B57,B61,B62,B63,B64,B7,B70,B71,B72,B75,B76,B79,B80,B81,B82,B84,B86,B87,B88,B89,B93,B94,B95,B96,B98,C10,C13,C14,C16,C18,C2,C20,C23,C25,C26,C27,C3,C30,C31,C32,C37,C4,C40,C42,C44,C45,C46,C48,C50,C54,C55,C57,C59,C6,C60,C65,C71,C74,C75,C77,C79,C8,C83,C85,C87,C9,D10,D11,D2,D4,D5,D7,D8,D9 |
Chr3:46167980 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C15,C20 |
Chr3:46168141 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,B48,C15,C20 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800636.1PF12037
ATAD3_N 52-317 aa
PF00004
AAA 385-512 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800636.1 |
Pfam | PF12037 |
ATAD3_N | Domain | 52 | 317 | 4e-110 | 368.0 | ATPase family AAA domain-containing protein 3, N-terminal |
XP_057800636.1 |
Pfam | PF00004 |
AAA | Domain | 385 | 512 | 8.6e-26 | 91.6 | ATPase family associated with various cellular activities (AAA) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。