当前解析结果
SmilChr03G002946| 统一新 Gene ID | SmilChr03G002946 |
|---|---|
| 名称 | SmilChr03G002946 |
| 描述 | uncharacterized SmilChr03G002946 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 46198180 - 46201533 / - |
| NCBI Gene ID | LOC131016098 |
|---|---|
| GeneID | 131016098 |
| locus_tag | - |
| NCBI Name | LOC131016098 |
| 原始查询 | SmilChr03G002946 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0114600; species=rice; confidence=high |
| 产物 | hit=Os06g0114600; species=rice; confidence=high |
| Arabidopsis | -- |
| Rice | Os06g0114600- identity=49; qcov=0.894; evalue=1.59e-120; confidence=high |
| GO | GO:0000184 (nuclear-transcribed mRNA catabolic process, nonsense-mediated decay) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016098 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057800662.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057800662.1 |
| 3 | Phragmoplast | Phragmoplast | 0.20000 | XP_057800662.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057800662.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057800662.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:46198420 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B22,C44 |
Chr3:46198423 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B126,B54,C47,C87 |
Chr3:46198746 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B38,B39,C15,C20 |
Chr3:46198764 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B11,B126,B48,C87 |
Chr3:46198961 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B22,C44 |
Chr3:46199512 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B77,C26 |
Chr3:46199538 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | D11 |
Chr3:46199538 |
GA |
G |
1bp_deletion | CDS_variant | 1 | D11 |
Chr3:46199973 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B22,C44 |
Chr3:46199990 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B77,C26 |
Chr3:46200018 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr3:46201128 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B4,C19,C58 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。