当前解析结果
SmilChr03G002951| 统一新 Gene ID | SmilChr03G002951 |
|---|---|
| 名称 | SmilChr03G002951 |
| 描述 | uncharacterized SmilChr03G002951 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 46228713 - 46231568 / - |
| NCBI Gene ID | LOC131016085 |
|---|---|
| GeneID | 131016085 |
| locus_tag | - |
| NCBI Name | LOC131016085 |
| 原始查询 | SmilChr03G002951 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartic/glutamic acid-rich protein [Source:NCBI gene (formerly Entrezgene);Acc:831580]; symbol=AT5G17160; hit=AT5G17160; species=arabidopsis; confidence=weak |
| 产物 | aspartic/glutamic acid-rich protein [Source:NCBI gene (formerly Entrezgene);Acc:831580]; symbol=AT5G17160; hit=AT5G17160; species=arabidopsis; confidence=weak |
| Arabidopsis | AT5G17160 (AT5G17160)aspartic/glutamic acid-rich protein [Source:NCBI gene (formerly Entrezgene);Acc:831580] identity=62.1; qcov=0.11; evalue=1.19e-15; confidence=weak |
| Rice | Os04g0597900- identity=50; qcov=0.114; evalue=2.1e-12; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016085 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057800643.1 |
| 2 | Chromosome | 染色体 | 0.80000 | XP_057800643.1 |
| 3 | Spindle pole body | Spindle pole body | 0.40000 | XP_057800643.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057800643.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057800643.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:46229140 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B37,C8 |
Chr3:46229491 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B118,B91,C59,C8 |
Chr3:46229519 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr3:46229546 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr3:46229788 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | D7 |
Chr3:46229788 |
AG |
A |
1bp_deletion | CDS_variant | 1 | D7 |
Chr3:46230159 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr3:46230202 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B117 |
Chr3:46230202 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B117 |
Chr3:46230276 |
C |
CA |
1bp_insertion | frameshift_variant | 50 | A15,A2,A25,A8,B1,B10,B105,B106,B108,B11,B113,B12,B121,B122,B13,B137,B138,B15,B19,B21,B27,B35,B36,B37,B57,B63,B78,B83,B87,B89,B95,B99,C12,C22,C23,C26,C27,C28,C3,C44,C45,C51,C54,C64,C66,C70,C74,C82,C85,D1 |
Chr3:46230279 |
TC |
T |
1bp_deletion | frameshift_variant | 50 | A15,A2,A25,A8,B1,B10,B105,B106,B108,B11,B113,B12,B121,B122,B13,B137,B138,B15,B19,B21,B27,B35,B36,B37,B57,B63,B78,B83,B87,B89,B95,B99,C12,C22,C23,C26,C27,C28,C3,C44,C45,C51,C54,C64,C66,C70,C74,C82,C85,D1 |
Chr3:46230420 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。