当前解析结果
SmilChr03G002955| 统一新 Gene ID | SmilChr03G002955 |
|---|---|
| 名称 | SmilChr03G002955 |
| 描述 | cell division cycle 20.2, cofactor of APC complex-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 46304293 - 46307288 / + |
| NCBI Gene ID | LOC131016094 |
|---|---|
| GeneID | 131016094 |
| locus_tag | - |
| NCBI Name | LOC131016094 |
| 原始查询 | SmilChr03G002955 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cell division cycle 20.2, cofactor of APC complex-like |
| 产物 | cell division cycle 20.2%2C cofactor of APC complex-like |
| Arabidopsis | AT4G33270 (CDC20.1)Transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:829463] identity=78.6; qcov=1; evalue=0; confidence=high |
| Rice | Os02g0700100 (OsWD40-51)- identity=76.3; qcov=0.934; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0005680 (anaphase-promoting complex); GO:0010997 (anaphase-promoting complex binding); GO:0031145 (anaphase-promoting complex-dependent catabolic process); GO:1904668 (positive regulation of ubiquitin protein ligase activity); GO:1905786 (positive regulation of anaphase-promoting complex-dependent catabolic process); GO:1990757 (ubiquitin ligase activator activity) |
| KEGG | smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00400 (WD40); PF12894 (ANAPC4_WD40); PF24807 (WD40_CDC20-Fz) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016094 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057800656.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057800656.1 |
| 3 | Nucleoplasm | 核质 | 0.40000 | XP_057800656.1 |
| 4 | Cytoskeleton | 细胞骨架 | 0.40000 | XP_057800656.1 |
| 5 | Spindle | Spindle | 0.40000 | XP_057800656.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:46304849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,B101,B115,B78,B8 |
Chr3:46305695 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A22,B104,B77,C26 |
Chr3:46305740 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr3:46306614 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr3:46306669 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr3:46306961 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B22,C44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800656.1PF24807
WD40_CDC20-Fz 132-429 aa
PF12894
ANAPC4_WD40 179-235 aa
PF00400
WD40 183-210 aa
PF00400
WD40 259-294 aa
PF00400
WD40 307-345 aa
PF00400
WD40 394-430 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800656.1 |
Pfam | PF24807 |
WD40_CDC20-Fz | Repeat | 132 | 429 | 2.9e-125 | 418.1 | CDC20/Fizzy WD40 domain |
XP_057800656.1 |
Pfam | PF12894 |
ANAPC4_WD40 | Repeat | 179 | 235 | 3.3e-17 | 63.2 | Anaphase-promoting complex subunit 4 WD40 domain |
XP_057800656.1 |
Pfam | PF00400 |
WD40 | Repeat | 183 | 210 | 1.7e-32 | 111.2 | WD domain, G-beta repeat |
XP_057800656.1 |
Pfam | PF00400 |
WD40 | Repeat | 259 | 294 | 1.7e-32 | 111.2 | WD domain, G-beta repeat |
XP_057800656.1 |
Pfam | PF00400 |
WD40 | Repeat | 307 | 345 | 1.7e-32 | 111.2 | WD domain, G-beta repeat |
XP_057800656.1 |
Pfam | PF00400 |
WD40 | Repeat | 394 | 430 | 1.7e-32 | 111.2 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。