当前解析结果
SmilChr03G002968| 统一新 Gene ID | SmilChr03G002968 |
|---|---|
| 名称 | SmilChr03G002968 |
| 描述 | uncharacterized SmilChr03G002968 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 46461429 - 46465359 / + |
| NCBI Gene ID | LOC131016102 |
|---|---|
| GeneID | 131016102 |
| locus_tag | - |
| NCBI Name | LOC131016102 |
| 原始查询 | SmilChr03G002968 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TMPIT-like protein [Source:NCBI gene (formerly Entrezgene);Acc:826635]; symbol=AT4G10430; hit=AT4G10430; species=arabidopsis; confidence=high |
| 产物 | TMPIT-like protein [Source:NCBI gene (formerly Entrezgene);Acc:826635]; symbol=AT4G10430; hit=AT4G10430; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G10430 (AT4G10430)TMPIT-like protein [Source:NCBI gene (formerly Entrezgene);Acc:826635] identity=67.2; qcov=0.95; evalue=6.89e-166; confidence=high |
| Rice | Os08g0152800- identity=68.9; qcov=0.922; evalue=6.37e-160; confidence=high |
| GO | GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF07851 (TMEM120A-B) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016102 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057800670.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057800670.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.60000 | XP_057800670.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057800670.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057800670.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:46461704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr3:46461831 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:46461979 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B20,B38,B97 |
Chr3:46462019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B20,B38,B39,B97,C39 |
Chr3:46462186 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr3:46463163 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B20,B82 |
Chr3:46463216 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B104 |
Chr3:46463216 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B104 |
Chr3:46464006 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:46464058 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr3:46465118 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B9 |
Chr3:46465118 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057800670.1PF07851
TMEM120A-B 17-334 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800670.1 |
Pfam | PF07851 |
TMEM120A-B | Family | 17 | 334 | 1.6e-96 | 324.1 | TMEM120A/B |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。