当前解析结果
SmilChr03G002969| 统一新 Gene ID | SmilChr03G002969 |
|---|---|
| 名称 | SmilChr03G002969 |
| 描述 | membrane protein of ER body-like protein |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 46465423 - 46472186 / - |
| NCBI Gene ID | LOC131016064 |
|---|---|
| GeneID | 131016064 |
| locus_tag | - |
| NCBI Name | LOC131016064 |
| 原始查询 | SmilChr03G002969 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | membrane protein of ER body-like protein |
| 产物 | membrane protein of ER body-like protein |
| Arabidopsis | AT4G27870 (AT4G27870)Vacuolar iron transporter (VIT) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828900] identity=49.2; qcov=0.209; evalue=2.98e-44; confidence=weak |
| Rice | Os06g0103800- identity=44.8; qcov=0.23; evalue=9.95e-48; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016064 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057800605.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057800605.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057800605.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057800605.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057800605.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:46465643 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C48,D6 |
Chr3:46465660 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr3:46465709 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A3,C11,C63,C69 |
Chr3:46465718 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,B48,B74 |
Chr3:46465739 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:46465769 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C25 |
Chr3:46465965 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:46466024 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr3:46466058 |
TCA |
T |
2bp_deletion | frameshift_variant | 1 | B124 |
Chr3:46466058 |
TCA |
T |
2bp_deletion | CDS_variant | 1 | B124 |
Chr3:46466077 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr3:46466267 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B127,D10 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
17 records
下载 cDNA FASTA17 records
下载 CDS FASTA17 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。