当前解析结果
SmilChr03G002972| 统一新 Gene ID | SmilChr03G002972 |
|---|---|
| 名称 | SmilChr03G002972 |
| 描述 | ABC transporter B family member 19-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 46519532 - 46525194 / + |
| NCBI Gene ID | LOC131016062 |
|---|---|
| GeneID | 131016062 |
| locus_tag | - |
| NCBI Name | LOC131016062 |
| 原始查询 | SmilChr03G002972 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter B family member 19-like |
| 产物 | ABC transporter B family member 19-like |
| Arabidopsis | AT2G36910 (ABCB1)ATP binding cassette subfamily B1 [Source:NCBI gene (formerly Entrezgene);Acc:818265] identity=41; qcov=1.01; evalue=0; confidence=medium |
| Rice | Os04g0459000 (MDR13)- identity=40.1; qcov=1.01; evalue=0; confidence=medium |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016062 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057800599.1 |
| 2 | Vacuole | 液泡 | 0.80000 | XP_057800599.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057800599.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057800599.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057800599.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:46520164 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B118,C11,C63,C69 |
Chr3:46520203 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:46521180 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr3:46521197 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr3:46521311 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr3:46521321 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,D11 |
Chr3:46521452 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B35,B74,C25,D11 |
Chr3:46521503 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B35,B74,C25,D11 |
Chr3:46521549 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B35 |
Chr3:46521552 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B35 |
Chr3:46521572 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B35 |
Chr3:46521585 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800599.1PF00664
ABC_membrane 37-310 aa
PF00005
ABC_tran 377-526 aa
PF00664
ABC_membrane 669-932 aa
PF00005
ABC_tran 1006-1155 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800599.1 |
Pfam | PF00664 |
ABC_membrane | Family | 37 | 310 | 7.6e-93 | 311.9 | ABC transporter transmembrane region |
XP_057800599.1 |
Pfam | PF00005 |
ABC_tran | Domain | 377 | 526 | 9.3e-73 | 244.0 | ABC transporter |
XP_057800599.1 |
Pfam | PF00664 |
ABC_membrane | Family | 669 | 932 | 7.6e-93 | 311.9 | ABC transporter transmembrane region |
XP_057800599.1 |
Pfam | PF00005 |
ABC_tran | Domain | 1006 | 1155 | 9.3e-73 | 244.0 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。