当前解析结果
SmilChr03G002975| 统一新 Gene ID | SmilChr03G002975 |
|---|---|
| 名称 | SmilChr03G002975 |
| 描述 | uncharacterized SmilChr03G002975 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 46561296 - 46564610 / - |
| NCBI Gene ID | LOC131018883 |
|---|---|
| GeneID | 131018883 |
| locus_tag | - |
| NCBI Name | LOC131018883 |
| 原始查询 | SmilChr03G002975 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030]; symbol=AT4G29090; hit=AT4G29090; species=arabidopsis; confidence=low |
| 产物 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030]; symbol=AT4G29090; hit=AT4G29090; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G29090 (AT4G29090)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030] identity=26.4; qcov=0.987; evalue=1.88e-21; confidence=low |
| Rice | gene-orf258 (orf258)- identity=27.6; qcov=0.514; evalue=1.88e-14; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018883 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057803560.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057803560.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057803560.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803560.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803560.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:46561302 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B118,B21,B52,C61,D6 |
Chr3:46561323 |
A |
ACT |
2bp_insertion | frameshift_variant | 6 | B105,B134,B26,B45,C10,C43 |
Chr3:46561379 |
CTA |
C |
2bp_deletion | frameshift_variant | 101 | A10,A11,A14,A18,A19,A21,A25,A4,A6,A7,A9,B105,B106,B117,B119,B12,B121,B123,B124,B126,B133,B134,B135,B138,B139,B15,B18,B19,B21,B24,B26,B28,B3,B30,B31,B32,B34,B35,B4,B41,B42,B43,B44,B45,B46,B49,B52,B53,B54,B57,B58,B60,B63,B67,B68,B71,B74,B75,B81,B82,B87,B88,B93,C1,C14,C15,C16,C17,C20,C21,C24,C25,C26,C28,C29,C31,C32,C33,C36,C37,C38,C44,C46,C47,C49,C51,C60,C64,C66,C68,C70,C74,C76,C78,C79,C8,C80,C82,C84,C85,D7 |
Chr3:46561385 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr3:46561402 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B117,B80 |
Chr3:46561408 |
C |
CG |
1bp_insertion | frameshift_variant | 35 | A10,A11,A6,B105,B106,B12,B126,B138,B15,B21,B26,B28,B31,B35,B42,B43,B45,B46,B49,B53,B67,B71,B82,C16,C24,C26,C28,C32,C38,C49,C51,C68,C78,C8,C82 |
Chr3:46561413 |
GA |
G |
1bp_deletion | frameshift_variant | 14 | A9,B104,B112,B122,B43,B57,B59,B63,B70,C34,C57,C61,C7,C71 |
Chr3:46561435 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B132,B26 |
Chr3:46561588 |
TC |
T |
1bp_deletion | frameshift_variant | 8 | A9,B119,B123,B134,B22,B36,B79,B87 |
Chr3:46561615 |
AGT |
A |
2bp_deletion | frameshift_variant | 47 | A13,A21,A25,A7,A9,B100,B104,B105,B106,B119,B123,B126,B133,B135,B137,B139,B140,B21,B22,B25,B34,B65,B68,B73,B85,B87,B93,B99,C10,C14,C16,C17,C27,C29,C3,C33,C35,C42,C50,C53,C58,C6,C74,C77,C84,D3,D5 |
Chr3:46561619 |
C |
CAT |
2bp_insertion | frameshift_variant | 2 | B123,C27 |
Chr3:46561619 |
C |
CAT |
2bp_insertion | CDS_variant | 2 | B123,C27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803560.1PF13966
zf-RVT 88-181 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803560.1 |
Pfam | PF13966 |
zf-RVT | Domain | 88 | 181 | 3.3e-17 | 63.6 | zinc-binding in reverse transcriptase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。