Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G002976`

染色体: Chr03 坐标: 46601679-46604961 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G002976`
名称	SmilChr03G002976
描述	chloroplastic import inner membrane translocase subunit HP30-2
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	46601679 - 46604961 / `-`

ID 对照

NCBI Gene ID	`LOC131016112`
GeneID	`131016112`
locus_tag	`-`
NCBI Name	`LOC131016112`
原始查询	`SmilChr03G002976`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chloroplastic import inner membrane translocase subunit HP30-2
产物	chloroplastic import inner membrane translocase subunit HP30-2
Arabidopsis	`AT5G24650` (AT5G24650) Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Source:NCBI gene (formerly Entrezgene);Acc:832536] identity=59.2; qcov=0.932; evalue=6.2e-98; confidence=high
Rice	`Os04g0405100` - identity=67.1; qcov=0.901; evalue=2.42e-105; confidence=high
GO	GO:0005515 (protein binding); GO:0008320 (transmembrane protein transporter activity); GO:0009706 (chloroplast inner membrane); GO:0042721 (TIM22 mitochondrial import inner membrane insertion complex); GO:0045036 (protein targeting to chloroplast); GO:0045039 (protein insertion into mitochondrial inner membrane)
KEGG	-
Pfam	PF00536 (SAM_1); PF02466 (Tim17)
InterPro	-
eggNOG	-
NR	GeneID:131016112

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057800702.1`
2	Mitochondrion membrane	线粒体膜	0.80000	`XP_057800702.1`
3	Mitochondrion inner membrane	线粒体内膜	0.20000	`XP_057800702.1`
4	Mitochondrion outer membrane	线粒体外膜	0.20000	`XP_057800702.1`
5	Chloroplast	叶绿体	0.20000	`XP_057800702.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:46602234`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B29,B81,B9
`Chr3:46602309`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B22,B23,B79,B99,C37
`Chr3:46602577`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B130,B48,B85
`Chr3:46603877`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr3:46604477`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr3:46604487`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C48
`Chr3:46604487`	`GC`	`G`	1bp_deletion	CDS_variant	1	C48
`Chr3:46604552`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A6,C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800702.1

263 aa

132

263

Tim17

SAM_1

PF02466 Tim17 52-171 aa PF00536 SAM_1 202-250 aa

XP_057800704.1

263 aa

132

263

Tim17

SAM_1

PF02466 Tim17 52-171 aa PF00536 SAM_1 202-250 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800702.1`	Pfam	`PF02466`	Tim17	Family	52	171	2e-13	51.3	Tim17/Tim22/Tim23/Pmp24 family
`XP_057800702.1`	Pfam	`PF00536`	SAM_1	Domain	202	250	1.1e-05	26.4	SAM domain (Sterile alpha motif)
`XP_057800704.1`	Pfam	`PF02466`	Tim17	Family	52	171	2e-13	51.3	Tim17/Tim22/Tim23/Pmp24 family
`XP_057800704.1`	Pfam	`PF00536`	SAM_1	Domain	202	250	1.1e-05	26.4	SAM domain (Sterile alpha motif)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944721.1
CTTAAAATAATGTTTATGTATTCTTTTTTTTTTTTTTTTTGCGAGGAAATGACGAAATGTTTTGTATTCTGATTTTGGCAATATTGCAGTTTTAGGGATCAAAATGAAAATACGAATAAATTACTGTACACTGTTATCCAATTCATAGCTCTCTCTTTCTAAAACCTCCACAAAACTGCAACCCCTTCCCCAAAAATCTCACTATCCACCAAAATCCTCTCGCAAATTCACCCTAGATTAGAGGGGGGAAACAACGAGAA...

XM_057944719.1
AATGTTTTGTATTCTGATTTTGGCAATATTGCAGTTTTAGGGATCAAAATGAAAATACGAATAAATTACTGTACACTGTTATCCAATTCATAGCTCTCTCTTTCTAAAACCTCCACAAAACTGCAACCCCTTCCCCAAAAATCTCACTATCCACCAAAATCCTCTCGCAAATTCACCCTAGATTAGAGGGGGGAAACAACGAGAAATTGGTTAAGCTAAATCTCGAAACACGGTTGAAAGCTAGCAAGGATTAATGGCGG...

CDS

2 records

下载 CDS FASTA

LOC131016112
ATGGCGGTGGAAATCCCAACGAAGGCCGGCGGGTTGATGGGAAATTCTCAGCAAAATCCGGTGGCTTTGGTGCAGGCCAAGCTGAAGGAGGTGGAAGTGAGGTTCAAGGGGTGGCTGGCGAAGCAGTCTCTCCCGGTTGAGGCCGCCGTTGTCACCATCACCAGCGCCGCCCAAGGCGCCGCTATTGGCGGCTTCATGGGAACGCTTACCGGAGGCGACGGGTCCTCGCTTCTCATGCCGCCGCCCAACGCTGCTAGCCT...

Protein

2 records

下载 Protein FASTA

XP_057800702.1
MAVEIPTKAGGLMGNSQQNPVALVQAKLKEVEVRFKGWLAKQSLPVEAAVVTITSAAQGAAIGGFMGTLTGGDGSSLLMPPPNAASLNPDAMASLKQAQALAGGPFVQARNFAVMTGANAGISCVMKRLRGKDDVQTSMAAAFGSGALFSLVSGMGGPNPAANALTSGLFFALVQGGIFQLGQKFSQPPAEDLNYVKTRSMLNNLGLQNYEKNFKRGLLTDTTLPLITDSALRDVKIPPGPRLLILEHIEREPEFKDRRK...

XP_057800704.1
MAVEIPTKAGGLMGNSQQNPVALVQAKLKEVEVRFKGWLAKQSLPVEAAVVTITSAAQGAAIGGFMGTLTGGDGSSLLMPPPNAASLNPDAMASLKQAQALAGGPFVQARNFAVMTGANAGISCVMKRLRGKDDVQTSMAAAFGSGALFSLVSGMGGPNPAANALTSGLFFALVQGGIFQLGQKFSQPPAEDLNYVKTRSMLNNLGLQNYEKNFKRGLLTDTTLPLITDSALRDVKIPPGPRLLILEHIEREPEFKDRRK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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